Detailed information on CNT30369366


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 7e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595547Oryza glumipatulaOryza meridionalis18.527.0910094forward
CNT30574718Oryza glumipatulaOryza barthii42.3250.9589.3215forward

Expression of CNT30369366

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MPPPPPPADPPPGDDASSSSFRCTRRRSGVRRGAVAGREVMSS*

>peptide 2 (48 aa)
MDGWRRRRSDDGEVERARAIGSLDRTADGAPLLSFSTLLRCDATWACEL

>peptide 3 (47 aa)
MDGVVVGRTTARWREREPSDHSIGRLMALRSSPSLLCFVATRLGLVSS

>peptide 4 (37 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAAGRSAARR*

Sequence

>CNT30369366
TGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAAGAA
GAACGAAAAACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAG
GAAACGGTAGGGATGCCGCCGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCG
TGCGGCGCGGCGCGGTTGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGGCGAGG
TGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGTTGCGACGCGACTTGGGCTTG
TGAGCTCT