« Back to Oryza glumipatula search


Detailed information on CNT30369360


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690462Oryza glumipatulaOryza sativa32.8646.8599.6253forward
CNT30555942Oryza glumipatulaOryza glaberrima30.9135.7499.16238forward
CNT3099818Oryza glumipatulaOryza rufipogon45.8442.2899.72353forward
CNT30574577Oryza glumipatulaOryza barthii32.8631.7899.21253forward
CNT30115572Oryza glumipatulaOryza nivara45.9738.5698.59354forward

Expression of CNT30369360

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSWRSLQFITFFLVKKKVELLVASGNGGLSVELLCNLYQYILYIVTTDIYLRFIASYRLMG*

>peptide 2 (46 aa)
MGKVCLLVIDENLFNGILLVAIVVIMFMLLAGGGAPPPRRRGFCVY*

>peptide 3 (33 aa)
MASSSSPSSSSCSCCSPAAARRRRAAAASACTD*

Sequence

>CNT30369360
CAGAAAGCATCCATTCTCTCACACACACCTCGATAAGTCGATATAAATAGAGTAAGATGATTAGTGTAGAGAGAGATCATTATTAGCATTCGATCTGCTT
CTTCGCCGTCGAAGTAATTAATCAAATCGGAGGAGATCATTAGCAAATTATCAGCTTGGGCTTCATGGGGAAGGTGTGCCTTCTCGTCATCGACGAGAAC
CTCTTCAATGGCATCCTCCTCGTCGCCATCGTCGTCATCATGTTCATGCTGCTCGCCGGCGGCGGCGCGCCGCCGCCGCGCCGCCGCGGCTTCTGCGTGT
ACTGACTGACCGGCCGGCGAGTGAAACCATGAACAACACTGCAGGTGCAGGTCGAGCTTGATTTCTAAGCTTTTAGTTCTTGTGTTTTTTTTTTCTCCTT
TTTTTTTCTTTTTCTTTTGTCCGTGCGATGAAGCTAGCTCGTGATTTCTTCTTCTTCATGTTTTCGGGAGTAATTAATTAACGTGTTCTTGTGTAGAAAT
ATATGTGAAGGATTTTCTGTTTGATCAGGGCATGTCTTGGAGGAGTTTGCAGTTCATAACTTTTTTTTTGGTAAAAAAAAAAGTTGAGTTGTTGGTGGCA
AGTGGCAACGGTGGTCTCTCTGTAGAATTGTTGTGTAATTTGTATCAATATATATTGTATATAGTAACAACGGATATTTATTTGAGATTCATTGCATCTT
ACAGGCTTATGGGTTAGTTACTTTGTATTGATTTCTTTGAATAATAGTGGTTTATGTGACCCAACTGTTA