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Detailed information on CNT30369350


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT004015, E-value = 3e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516889Oryza glumipatulaJuglans regia31.6536.3682.27220forward
CNT30377262Oryza glumipatulaArabidopsis thaliana44.1752.5783.71307forward
CNT30617295Oryza glumipatulaSesamum indicum30.0750.9883.73209forward
CNT30728062Oryza glumipatulaCorchorus capsularis42.5933.9885.81296forward
CNT30402401Oryza glumipatulaBeta vulgaris21.0112.2991.1146forward
CNT30486254Oryza glumipatulaOlea europaea27.3449.6187.37190forward
CNT30708222Oryza glumipatulaGlycine max27.1946.986.77189forward
CNT3092760Oryza glumipatulaSolanum tuberosum42.4542.6382.71295forward
CNT30291318Oryza glumipatulaTriticum aestivum36.9877.1891.44257forward
CNT30223001Oryza glumipatulaHordeum vulgare22.5956.4795.54157forward
CNT30562825Oryza glumipatulaActinidia chinensis41.7352.5484.83290forward
CNT30542792Oryza glumipatulaBrassica napus20.7233.1886.11144forward
CNT30442409Oryza glumipatulaAegilops tauschii69.3571.9482.16482forward
CNT30253208Oryza glumipatulaAvena sativa49.528.6285.76344forward
CNT30261872Oryza glumipatulaBrassica rapa49.9339.2183347forward
CNT30614070Oryza glumipatulaArabis alpina26.9113.5389.3187forward
CNT30608822Oryza glumipatulaGossypium raimondii31.832.9986.88221forward
CNT30209019Oryza glumipatulaHelianthus annuus44.8937.3784.29312forward
CNT30627268Oryza glumipatulaDaucus carota35.2519.7985.31245forward
CNT30722476Oryza glumipatulaTriticum spelta49.551.4285.76344forward
CNT30364844Oryza glumipatulaSorghum bicolor40.4364.4586.12281forward
CNT30433323Oryza glumipatulaPapaver somniferum48.4930.8981.01337forward
CNT30570854Oryza glumipatulaVitis vinifera21.5874.6388150forward
CNT3033661Oryza glumipatulaTheobroma cacao27.9193.2786.08194forward
CNT3057373Oryza glumipatulaAmborella trichopoda33.5342.7582.4233forward
CNT30322043Oryza glumipatulaAsparagus officinalis50.6542.0584.94352forward
CNT30149545Oryza glumipatulaBrachypodium distachyon12.6626.1989.7788forward
CNT30117026Oryza glumipatulaOryza nivara37.4138.6997.69260forward
CNT30333708Oryza glumipatulaCynara cardunculus48.241.3684.48335forward

Expression of CNT30369350

Peptides detected in this lncRNA

>peptide 1 (38 aa)
NINNRRPASSNTVPKKVPIAQTKIQSEDIGSGRWRTRR*

>peptide 2 (32 aa)
MARISSAHHVLGIPHLLCELRNSKGTVLLGAT*

>peptide 3 (70 aa)
MSSASCCSSSSYSPSSSAVASWYCWYSETRSFMLLSASVNSISSMPSPASRWNVTDTGLHIVGDPLDEVG*

>peptide 4 (54 aa)
MFLASHICCVSSGTVRARYCWEPRDVSGANPTMKKWRRGKGIRFTASLRRSEFS*

Sequence

>CNT30369350
AATATCAACAATCGCAGACCAGCATCAAGTAATACAGTACCCAAAAAGGTTCCCATAGCACAGACGAAAATACAAAGCGAAGACATAGGAAGCGGGCGGT
GGCGTACGAGGCGGTAATACGGTGATAATGTAAGACGGAAACACCAAGCACACAAAACCCTGCCCTAGAACCACCAAGCAAAAGCCACCTTACATGTCGT
CAGCCTCCTGCTGCTCCTCGTCCTCGTACTCGCCCTCCTCATCGGCGGTGGCATCCTGGTACTGCTGGTACTCAGAGACAAGGTCGTTCATGTTGCTCTC
TGCCTCGGTGAACTCCATCTCGTCCATGCCTTCGCCAGCCTCTCGGTGGAATGTCACAGACACTGGACTTCACATTGTTGGGGATCCACTCGACGAAGTA
GGATGAGTTCTTGTTCTGGACATTGATCATCTGCTCATCAACCTCCTTGGTGCTCATCTTTCCACGGAACATGGCAGAGGCGGTGAGGTAACGGCCATGG
CGAGGATCAGCAGCGCACATCATGTTCTTGGCATCCCACATCTGCTGTGTGAGCTCAGGAACAGTAAGGGCACGGTACTGCTGGGAGCCACGTGATGTCA
GCGGGGCGAATCCGACCATGAAGAAGTGGAGACGGGGAAAGGGGATAAGGTTCACTGCCAGCTTACGGAGGTCAGAGTTCAGCTGACCAGGGAAC