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Detailed information on CNT30369325


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 1e-108

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671996Oryza glumipatulaSetaria viridis35.7451.6488.67362forward
CNT30522168Oryza glumipatulaSetaria italica44.9252.2487.47455forward
CNT30685359Oryza glumipatulaTriticum urartu45.1145.5289.72457forward

Expression of CNT30369325

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVMRPSPNTFAAALPASAGEERAMVAAAMSTSLAASSSAAAAAGVCVRA

>peptide 2 (75 aa)
MRGHGSTAAAALTCRGRSWWSARFSRGPLPVTMAWTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 3 (78 aa)
KQANFIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

Sequence

>CNT30369325
AAACAAGCTAATTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCT
CTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACT
CTCCTGCAGAGACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGAC
GAAGTTGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGATCGCCAGGATGCTCT
GCGCGTGGATCAAGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGACCCCGCCTTGAACCACACCGCCTCGCCGAACTTGACGCC
GTTGCGGGCGAGGAGCTCCGGGAACACGCAGCCCAGCGCGCCGAGCATCGCCCACCTGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCC
GGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCA
CGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCGGCGGGCTTGGGCTTCGCCGCCGACTTGCGCATGGTGATGCGCCCCTCGCCGAACACCTTCGCGGC
GGCCTTGCCGGCCAGCGCCGGGGAGGAGAGGGCCATGGTGGCGGCGGCCATGTCTACCTCGCTTGCTGCTTCAAGCTCAGCTGCTGCTGCTGCTGGGGTG
TGTGTGCGTGCTG