« Back to Oryza glumipatula search


Detailed information on CNT30369317


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690110Oryza glumipatulaOryza sativa31.3521.9199200forward
CNT30552241Oryza glumipatulaOryza glaberrima20.8519.8298.5133reverse complement
CNT30100028Oryza glumipatulaOryza rufipogon39.1839.6897.6250forward
CNT30574722Oryza glumipatulaOryza barthii42.4843.7891.14271forward

Expression of CNT30369317

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MDGWRRRRSDDGEVARITRGRSCGRAPAPRQQQRWREREPSDHSIGRLMALRSSPSLLCFVATRLGLVSSVGGGGRR

>peptide 2 (39 aa)
MRGARRTSTRAEHPAHTQQGNGARGGGAACGAARLPVER*

>peptide 3 (44 aa)
LRNVTSTPQNVQIQASFDICTVMSVMFKMIQHKFDVKQMKLKGN*

>peptide 4 (46 aa)
MDGVVVGRTTARSRASRAGVAAGERPRRGSSRGGESESHRITRSDG*

Sequence

>CNT30369317
GATTGCGAAATGTTACATCGACACCGCAAAATGTCCAGATTCAGGCATCGTTTGATATATGCACTGTGATGTCCGTAATGTTTAAAATGATTCAACACAA
ATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGT
AAAAAAAAAAAAAAGAAGAACGAAAAACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCC
AGCCCACACGCAGCAAGGAAACGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTTGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAG
ATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGGCGAGGTCGCGCGCATCACGCGCGGGCGTAGCTGCGGGCGAGCGCCCGCGCCGCGGCAGC
AGCAGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGTTGCGACGCGACT
TGGGCTTGTGAGCTCTGTGGGGGGAGGAGGGAGGCGGA