« Back to Oryza glumipatula search


Detailed information on CNT30369281


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101869Oryza glumipatulaOryza rufipogon28.8749.1498.53341reverse complement

Expression of CNT30369281

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MFQEVIAMFVPVLNQSSSAPFQAIIGTTSDILLAAKPGSHFSLSGQ*

>peptide 2 (81 aa)
MFPTSVLPPYLRLSPSSCCSSSSPPSATSSPLPYSPEQWGYQTAGDESGAARSSATSPWQLLRRDDGQGPRYPPQVNTEVR*

>peptide 3 (64 aa)
MSPGQPDPAPPHHGSCSGATMARGRATLLRLIQKLGEEGPGQDLQASYLSMVENLELRFDFSCS*

>peptide 4 (49 aa)
LTRAPLQPYPPPRVTPFTHPFSLSPRRRVQILPLLLPLNSSPEQRIHRL*

Sequence

>CNT30369281
CTTACTAGGGCGCCTCTCCAACCTTATCCTCCTCCCAGAGTAACACCTTTCACGCATCCCTTTTCCCTTTCTCCGCGTCGGCGCGTCCAAATCCTCCCGC
TCCTCCTCCCCTTGAACTCCTCGCCGGAGCAACGGATCCACCGGCTCTGACGCCGACAAACGCGGGTCAGCTAGATCCAGCGCCACCTGCTCCATACTCC
CCCGAATATTCCACTTACGAGCCCTGCCGCCACGTCTGGAGGTCATGTTCCCCACTTCGGTGCTGCCGCCGTACTTGCGGCTCTCCCCCTCTTCCTGCTG
CTCTAGCTCTAGCCCTCCCTCCGCAACATCCTCTCCTTTGCCCTACTCGCCGGAGCAATGGGGATACCAGACTGCCGGCGATGAGTCCGGGGCAGCCAGA
TCCAGCGCCACCTCACCATGGCAGTTGCTCCGGCGCGACGATGGCCAGGGGCCGCGCTACCCTCCTCAGGTTAATACAGAAGTTAGGTGAAGAAGGACCC
GGGCAAGACTTACAGGCAAGCTACCTCTCCATGGTGGAGAACTTGGAGCTCAGATTTGATTTCTCGTGTAGCTAGTAACTACTCAAGATTGGAGGCATGT
TCCAAGAAGTCATTGCAATGTTTGTTCCAGTACTGAACCAATCTAGCTCGGCTCCATTTCAAGCCATCATAGGCACCACCTCAGACATTCTACTCGCTGC
AAAGCCAGGGAGCCATTTCTCTCTCTCAGGACAATGACAAGCATTGGGATAGCCAAGGCAGTAGATTCTCAATCAATTGGTGCTCTGTCTACTAGGTGAA
GAGTGACAAATAAAGAATGTAAATGACCAACACCAAAGCAGGATCTGCAAGTCAACTGGCTCATCTGCATATTATTTGAGGTGTTGTCGGACTGCCTGCG
ATGCCATTCGTCAACTCTTTTCTAGTTGCACTACCTCTTTGGTTATCTAAGCTTAAGAATTAATATTCAAATTACATCTCAGATGTAGCTGATGAGATTG
GCATTGCTATTGTTTCATATTAGATTGTTGCCAAACTGATTAATTGTACGTGGATGTCAATGCATTGAAATCCATTCTACCATTGTATTTGTGATCATCT
GTGATGTGTTATTAGGATCCTACTATTCTGATGGAAGCAAATAATATAAATGAATCAGCAAACCCATTTTAGTTTGCCCTC