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Detailed information on CNT30369267


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690639Oryza glumipatulaOryza sativa42.2150.697.62336forward
CNT30552148Oryza glumipatulaOryza glaberrima83.1768.1197.89662forward
CNT3099966Oryza glumipatulaOryza rufipogon52.8929.8297.39421forward
CNT30574855Oryza glumipatulaOryza barthii81.5386.1997.84649forward

Expression of CNT30369267

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDKLCCFVPNDIDRHGMGVAPLDYTLLLHTIGI*

>peptide 2 (64 aa)
KNEKQKRKKNRGIAPASPSRHISCVLPPPPLFLSPPAPPPPPPPVQPSSSFATPSARLLAWLAA*

>peptide 3 (83 aa)
RKTKNKKEKKTGGSLLQALAATSPASYHRRRCSCLRRRRRRRRRRFSRRRPSPPHPLVSLRGLLLDAAASIRDEKAPDSPGSS*

Sequence

>CNT30369267
AGAAAAACGAAAAACAAAAAAGAAAAAAAAACAGGGGGATCGCTCCTGCAAGCCCTAGCCGCCACATCTCCTGCGTCCTACCACCGCCGCCGCTGTTCCT
GTCTCCGCCGGCGCCGCCGCCGCCGCCGCCGCCGGTTCAGCCGTCGTCGTCCTTCGCCACCCCATCCGCTCGTCTCCTTGCGTGGCTTGCTGCTTGACGC
TGCTGCATCGATCAGAGACGAGAAGGCTCCAGACAGCCCAGGAAGCAGTTGAACAGGAGTAACAAGGGAAGGATAAGGTATGGAGGGTTCCAACGTTGGA
GGAGTTGAGTCAGAGTATCGAAGGAGTTAAAGCAAGTACAAGACGGACTTGTGCGATGGATAAACTGTGTTGCTTTGTACCTAATGACATTGATCGGCAT
GGGATGGGAGTAGCACCCTTGGACTACACATTATTATTGCACACTATTGGAATTTAGTTTTAGATTATGTTTCTGCTTAGCATAAGTTTTGCGTAGAACT
TGTAACGGTCATTTAAAGTTCCGGTCCTTATTTTCACGTGGAATTTGAGGAGCTAAGATGGTTTGGATTGTGTGGATTATATCGTTATTGAGTTATCTTA
TAAGTGACTGTCGTGGATGTCCGTAATTTTAGGGGGAGACTGCCGAAATTTCTAATAATTTTTGGAGTTAGTGGTTTTTGAGTGTATTTTGGTGTGGCAC
TCTAGGTACATAGTTACCTGGGATGTTACATAGACACCAACAGAAGAAAAAGATCCCCTAACTACTTAATTCTATTAGAGAACCTCGACCCGAAGT