Detailed information on CNT30369260


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 7e-111

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395272Oryza glumipatulaTriticum turgidum51.7355.4589.12524forward
CNT30666199Oryza glumipatulaTriticum dicoccoides51.7354.9388.93524forward
CNT30685729Oryza glumipatulaTriticum urartu51.7353.3688.93524forward
CNT30345522Oryza glumipatulaEragrostis tef59.6260.8390.89604forward

Expression of CNT30369260

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQIARMLCAWIKLGLPR*

>peptide 2 (46 aa)
MVMRPSPNTFAAALPASAGEERAMVAAAMSTSLAASSSAAAAAGVCV

>peptide 3 (74 aa)
FIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

>peptide 4 (75 aa)
MRGHGSTAAAALTCRGRSWWSARFSRGPLPVTMAWTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

Sequence

>CNT30369260
TTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCTCTCCAATACTC
GTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACTCTCCTGCAGAG
ACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGACGAAGTTGGTGG
TCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCA
CCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCC
GGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATCGCCAGGATGCTCTGCGCGTGGATCAAGCTCGGGTTGCCGAGGTAG
TCGAGCCCGCCCTCGCTGAAGATCTGCGACCCCGCCTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAACACGCAGC
CCAGCGCGCCGAGCATCGCCCACCTGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGG
TAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCGGCGGGCTTGGGCTTCGCCGCCGACTTGCGCATGGTGATGCGCCCCTCGCCGAACACCT
TCGCGGCGGCCTTGCCGGCCAGCGCCGGGGAGGAGAGGGCCATGGTGGCGGCGGCCATGTCTACCTCGCTTGCTGCTTCAAGCTCAGCTGCTGCTGCTGC
TGGGGTGTGTGTG