Detailed information on CNT30369259


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30115578Oryza glumipatulaOryza nivara38.0147.5398.08260forward

Expression of CNT30369259

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MALRSSPSLLCFVATRLGLVSSVGGGGRR

>peptide 2 (37 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAAGRSAARR*

>peptide 3 (44 aa)
LRNVTSTPQNVQIQASFDICTVMSVMFKMIQHKFDVKQMKLKGN*

>peptide 4 (66 aa)
MDGVVVGRTTARSRASRAGVAAGEVERARAIGSLDRTADGAPLLSFSTLLRCDATWACELCGGRREA

>peptide 5 (39 aa)
MDGWRRRRSDDGEVARITRGRSCGRGGESESHRITRSDG*

>peptide 6 (43 aa)
MPPPPPPADPPPGDDASSSSFRCTRRRSGVRRGAVAGREVMSS*

Sequence

>CNT30369259
GATTGCGAAATGTTACATCGACACCGCAAAATGTCCAGATTCAGGCATCGTTTGATATATGCACTGTGATGTCCGTAATGTTTAAAATGATTCAACACAA
ATTTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGT
AAAAAAAAAAAAAAGAAGAACGAAAAACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCC
AGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCAC
GCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTTGCCGGTCGAGAGGTGATGAGTAGTTGACGCGGAGCAGATATATATGGATGGATGGCGTCGTCGTCG
GTCGGACGACGGCGAGGTCGCGCGCATCACGCGCGGGCGTAGCTGCGGGCGAGGTGGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGATGG
CGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGTTGCGACGCGACTTGGGCTTGTGAGCTCTGTGGGGGGAGGAGGGAGGCGGA