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Detailed information on CNT30369253


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006145, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555104Oryza glumipatulaOryza glaberrima82.8718.2590.66803reverse complement
CNT30595632Oryza glumipatulaOryza meridionalis38.4942.7886.86373forward
CNT30105015Oryza glumipatulaOryza longistaminata31.2719.888.12303forward
CNT30100448Oryza glumipatulaOryza rufipogon29.8298.9792.04289forward
CNT30116562Oryza glumipatulaOryza nivara50.2630.7689.53487reverse complement

Expression of CNT30369253

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MRRDCIERVLVLLLGARGLFIPENYKICPYRTRLLSLTNSK

Sequence

>CNT30369253
GTCATATATGCATCAATTGGCAGTCATTAATAAGTAAGAAAGAACTAAATCTACTTGATCGGCTATAGATATTAACAATATATAATCCTTATATCGATAT
ATACTTAAATCAAGTGATTGGGATAGATCGGTCGCCATGCCGAGACAGTATAAATCACTTAGATCGAAATATATACTAATAATAAGACTATATATGTTGA
TAGCATAGCCGATCAGATAGATCTAGCATGTATCGGCTAATACTCCGATACCACTCTATATTAAGATATTAAAGCAAATAGAATATACCAAACAGAAAGC
CTAATATGCTTAAATGCAACAAGATCTTAATATAAATGACAGATTTAGCATGTCAATAAAGCATATAAGATAAAAGCTAAATCAGGTAAGATCGGCTGAA
ACCCCGATGCTACCCTAATCGGCAATCAAAGGCAGGCTAGAGATTGAGATTCTAATCATGACTCATAAGATCAAACTCAACTGATGCAGCTATAAGTATG
AAAAGAAGAACAATATCTAGACAATCAAGTCGTTGGATGTGTCATAGAGTGGTGGATATCCTATATAATCTAAGTTAACATCGGTATTTAACCTAATCGG
CTGCCTTCAACTGACAGATGTTAGCGGATTGTAGGTTAGATAACGATATTGCCGGAGATCATGCAAGATATATGATAACTCGACGAATTACATAAACAAG
ATGAGAGTGTCATGAAGATGGAAGCACTAATCCCGAGAACGCAAGCCGCCATAACAAGTTTTACCTCTTGTTGAAGATTGAAATCGATGCAGTCAACTCG
AAAGCAAGAACTCGTCGAAACAAAACGAAAGTAAAAAGGGTGGCGATGCGCCGAGATTGTATTGAACGTGTGTTAGTTTTATTACTTGGGGCTCGGGGCC
TATTTATACCCGAGAATTACAAAATATGTCCATATCGGACACGACTCTTATCTCTAACAAACTCTAAGA