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Detailed information on CNT30369242


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 9e-125

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30250793Oryza glumipatulaAvena sativa56.7653.9289.45550forward
CNT30664970Oryza glumipatulaTriticum dicoccoides59.1368.5490.92573forward
CNT30345511Oryza glumipatulaEragrostis tef37.4640.9789.81363forward
CNT30363113Oryza glumipatulaSorghum bicolor57.2856.3589.19555forward
CNT30603498Oryza glumipatulaOryza punctata91.3396.291.53885forward
CNT30556492Oryza glumipatulaPanicum hallii65.9469.6887.01639forward

Expression of CNT30369242

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MRGHGSTAAAALTCRGRSWWSARFSRGPLPVTMAWTKKPNMENMARRPFLISFTLSSAKASGSSARPSGSKLPPG*

>peptide 2 (78 aa)
KQANFIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

>peptide 3 (48 aa)
MVMRPSPNTFAAALPASAGEERAMVAAAMSTSLAASSSAAAAAGVCVRA

Sequence

>CNT30369242
AAACAAGCTAATTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCT
CTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACT
CTCCTGCAGAGACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGAC
GAAGTTGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTAGTCGAGCCCGCCC
TCGCTGAAGATCTGCGACCCCGCCTTGAACCACACCGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAACACGCAGCCCAGCGCGCCGA
GCATCGCCCACCTGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGG
GAACTCGCCGGTCAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCGGCGGGCTTG
GGCTTCGCCGCCGACTTGCGCATGGTGATGCGCCCCTCGCCGAACACCTTCGCGGCGGCCTTGCCGGCCAGCGCCGGGGAGGAGAGGGCCATGGTGGCGG
CGGCCATGTCTACCTCGCTTGCTGCTTCAAGCTCAGCTGCTGCTGCTGCTGGGGTGTGTGTGCGTGCTG