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Detailed information on CNT30369227


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552314Oryza glumipatulaOryza glaberrima10043.7899.81538forward
CNT30109962Oryza glumipatulaOryza longistaminata17.8432.6510096forward
CNT3099612Oryza glumipatulaOryza rufipogon81.975299.55441forward

Expression of CNT30369227

Peptides detected in this lncRNA

>peptide 1 (56 aa)
DDEDAVGVGVAELAGEAEEATPRRRFSSAKLREAATVDAGEACFIDEAGLPMKSSK*

Sequence

>CNT30369227
GGACGACGAGGACGCAGTCGGAGTAGGGGTCGCCGAACTAGCAGGTGAGGCAGAGGAGGCCACACCACGGCGGCGCTTCTCTTCGGCGAAGTTGCGGGAG
GCAGCGACGGTGGACGCCGGAGAGGCCTGCTTCATCGACGAAGCTGGCTTGCCAATGAAGAGCTCAAAGTAGCGCTTCTTTGAGGCGGCGCCGGCGTCCT
CGTCGTCGTCAGAGTCGGAGTCCGTCGCGTCAGGGTCCTCGAACACGACGCGGACGCGACGGCTTGGCTGCAGGGAGGCCGCCGCCGACGGCACATGGGG
CCTGGAGAAAGCAGCAGAGGGTTTAAGGCCAAACCCGGATAGCCTCTTCGTCTTGGGCTTCTTCGCCATCACCTTCTTGAGGAGCATCTGCTGCTGCTTG
GAAGGGGCCATTTCTCTCTTCTTCTAACTCTTGCCGGAAAAGAACTCTAAAATTCCTCACCAAAACTGACAAAACTGAAGGGGAAAAACTCTAAAAGGGG
GAAACTTTTTTTTTCTCTTGTGCAAAAATTTGACGGAG