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Detailed information on CNT30369217


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENG4|PSAI_ORYNI, E-value = 2e-17

BLAST vs NONCODE:
NONOSAT000331, E-value = 6e-167

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Oryza glumipatulaOryza sativa52.867.499.12342forward
CNT30678052Oryza glumipatulaSetaria viridis48.8424.3887.97316forward
CNT30554212Oryza glumipatulaOryza glaberrima52.79.0499.41341forward
CNT3018021Oryza glumipatulaZea mays52.48.7387.32339forward
CNT30227829Oryza glumipatulaAnanas comosus26.1235.9686.98169forward
CNT30150293Oryza glumipatulaBrachypodium distachyon23.348.9695.36151reverse complement
CNT30103728Oryza glumipatulaOryza rufipogon22.2612.4197.92144forward

Expression of CNT30369217

Peptides detected in this lncRNA

>peptide 1 (33 aa)
EPHNIPYYITYTTKDPYYDPVWKYIEKIRSRRF*

>peptide 2 (32 aa)
MDYINNKKIAKKEKQLKRFDFSFPILAAFLSF*

>peptide 3 (62 aa)
KSHITYHIILLTLQKIRIMILCGNTLRKFGPVGSRQSYFSAHKEIKKPLQLPEILSLLKARK*

>peptide 4 (35 aa)
MRLFRIQNLLCLLPSTCNTYSTTLGPHKSAVRIDT*

Sequence

>CNT30369217
AAGAGCCACATAACATACCATATTATATTACTTACACTACAAAAGATCCGTATTATGATCCTGTGTGGAAATACATTGAGAAAATTCGGTCCCGTCGGTT
CTAGACAATCTTATTTTTCTGCACATAAAGAAATAAAGAAGCCATTGCAATTGCCGGAAATACTAAGCCTACTAAAGGCACGAAAATAGAGGGTAAGTTA
AAATCCATCATAGAATAGGTGTCTCCATTCAAATTTACTATTTCTATCTATTCGATTTGATCTATTCAAAAAATATCTTAAGATTCTTATGATATAATTA
TGTATATCTATTATAACGAGTATTGACTATTGTATTTTTGATATTCTAAAAATAGAATCGAATGGATTATATAAATAATAAGAAAATAGCAAAAAAGGAG
AAGCAATTAAAAAGATTTGATTTTTCTTTTCCGATCCTCGCGGCCTTTCTATCATTCTAATCGAACTTGAAATTGGATTCAAAGTACGAATTAGTCGAAT
GCGCCTATTTCGAATCCAAAATCTTTTGTGTCTACTTCCTTCCACATGTAATACTTATTCAACCACTCTCGGACCCCACAAATCCGCTGTAAGGATTGAT
ACATAGGACTTTTAGTTGATTGATATTGCCGTAAAGTTGAAACTTTT