Detailed information on CNT30369204


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 3e-159

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689864Oryza glumipatulaOryza sativa45.4948.2799.16237forward

Expression of CNT30369204

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAAGRSAARR*

>peptide 2 (37 aa)
MDGWRRRRSDDGEVARITRGRSCGRESESHRITRSDG*

>peptide 3 (53 aa)
HHTRVRGETVKVKKKKRRTKNSSKVRPCSLLHERCTKNQHTSRASSPHAARKR*

>peptide 4 (43 aa)
MPPPPPPADPPPGDDASSSSFRCTRRRSGVRRGAVAGREVMSS*

>peptide 5 (30 aa)
MALRSSPSLLCFVATRLGLVSSVGGGGRRRR

>peptide 6 (66 aa)
MDGVVVGRTTARSRASRAGVAAGERARAIGSLDRTADGAPLLSFSTLLRCDATWACELCGGRREAEA

Sequence

>CNT30369204
ACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTAAAAAAAAAAAAAAGAAGAACGAAAAACAGTAGTAAGGTGAGGCCCTGCTCGCTGTTACATGA
GAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAACGGTAGGGATGCCGCCGCCGCCGCCGCCGGCCGATCCGCCGC
CCGGCGATGATGCGTCGTCGTCGTCGTTCAGGTGCACGCGGAGGCGGAGCGGCGTGCGGCGCGGCGCGGTTGCCGGTCGAGAGGTGATGAGTAGTTGACG
CGGAGCAGATATATATGGATGGATGGCGTCGTCGTCGGTCGGACGACGGCGAGGTCGCGCGCATCACGCGCGGGCGTAGCTGCGGGCGAGAGAGCGAGAG
CCATCGGATCACTCGATCGGACGGCTGATGGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGTTGCGACGCGACTTGGGCTTGTGAGCTCTGTGGGGG
GAGGAGGGAGGCGGAGGCGGG