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Detailed information on CNT30369202


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187975Oryza glumipatulaSecale cereale50.6253.8892.9451forward
CNT30301046Oryza glumipatulaTriticum aestivum39.9643.0594.94356forward
CNT30393967Oryza glumipatulaTriticum turgidum39.9659.3394.38356forward
CNT30552306Oryza glumipatulaOryza glaberrima69.796.1399.68621forward
CNT30251938Oryza glumipatulaAvena sativa39.6244.6392.63353forward
CNT30665949Oryza glumipatulaTriticum dicoccoides39.9641.8895.22356forward
CNT30473044Oryza glumipatulaSaccharum spontaneum40.5240.9892.52361forward
CNT30129613Oryza glumipatulaCorymbia citriodora39.9648.6392.98356forward
CNT30685781Oryza glumipatulaTriticum urartu29.9730.6294.38267forward
CNT30574663Oryza glumipatulaOryza barthii62.8568.0498.93560forward
CNT30499073Oryza glumipatulaDigitaria exilis39.7347.5287.01354forward
CNT30115779Oryza glumipatulaOryza nivara58.9210099.81525forward
CNT30603587Oryza glumipatulaOryza punctata57.13100.294.3509forward

Expression of CNT30369202

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARSSGKTQPSAPSMAHRQWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (31 aa)
MKAMDLTAVARRRSTLTCRGRSWWRRPMRCC*

>peptide 3 (31 aa)
MVDAAIDASLGLGGDGHRCFWNVCLLSSSAAV

Sequence

>CNT30369202
TTTTGCATGTGATTATTTGAGTCCGCGTACATTTCCATGTACCATGGGGTATTCCATTCCATACCGCCAGGCAAACTGATTTCCCAGGAACAAATCAGAT
AAAAATTATTTTACACAATCAGGTCCATTGTACTTCTTTCATCAACCAACCAGATAACATTGTTTTACACAATCTGAACGAACGAAGCAAATATTCGGGT
ACGCGGAAAGAGGAGAACGTCGCGCGTCTCACCGCAGCCTGCATGAAAGCAATGGACCTCACCGCCGTTGCTCGCCGGAGATCCACACTCACTTGCCGGG
GACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGTTGACGGGGTCGGCCAGGTGGTCGGCCAGGTTCTCCAGTGGCCCCTTGCCGGTGACGATGGCCTGG
ACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCGAACGCCTCGGGGTCGTCGGCGAGGAGCTCCG
GGAAGACGCAGCCGAGCGCGCCCAGCATGGCCCACCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCCGACAGCCCGGC
GGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCCGCGGCGGGCTTGGGCTTG
GCCGCCGACTTGCGCATCGTGACGCGGCCCTCGCCGAACACCTTGGCATTGGCGACCGCCTTGCCGGCGAGGGCGGCAGGGGAGGAGAGTGCCATGGTGG
ACGCCGCCATTGACGCGAGCCTAGGACTAGGAGGAGATGGCCACAGATGCTTTTGGAATGTGTGTCTTTTGAGCTCGTCAGCTGCTGTGGT