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Detailed information on CNT30369193


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006661, E-value = 5e-150

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690731Oryza glumipatulaOryza sativa62.7929.499.26675forward
CNT3099794Oryza glumipatulaOryza rufipogon97.02100.4897.71043forward
CNT30574816Oryza glumipatulaOryza barthii100.5663.3698.061081forward
CNT30115548Oryza glumipatulaOryza nivara58.0598.8999.04624forward

Expression of CNT30369193

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MPSKSSFDSILFRPLQRRERDLVYGSSGARSKRCRSRHRRRSDRCRPSQAEPSRQRLLLEVLLKTPQ*

>peptide 2 (76 aa)
LGFPFLALFSASLSRHSSLSTPKPKKPRERAPTLPLHLSFVVGRRKGARRRSPTSRLHPYLIHVLLSSLHAEQILF*

>peptide 3 (75 aa)
MAQQVRRSATVFFTSGCRRHCRFRLLRSSSSRSSRRRSPAEGRRRREDARAVAVTKTPENFNLTRDDCLIGEEVI*

Sequence

>CNT30369193
CCTCGGTTTCCCTTTTCTCGCTCTCTTCTCCGCCAGTCTGAGTCGCCATTCTTCACTGTCCACCCCTAAGCCGAAGAAACCCAGGGAGAGAGCTCCAACT
CTCCCTCTCCACCTCTCTTTCGTCGTCGGCCGCCGAAAAGGGGCACGCCGCCGATCGCCAACGAGTCGTCTCCATCCCTATCTGATTCACGTTCTATTAT
CTTCTCTCCATGCCGAGCAAATCCTCTTTTGACTCCATCTTGTTTCGTCCACTGCAGCGACGGGAACGCGACCTCGTCTACGGGAGCTCTGGAGCGCGCT
CCAAGCGCTGCCGCAGCCGACATCGTCGCCGTTCCGACCGCTGTAGACCGAGCCAAGCCGAGCCGTCACGCCAACGCCTTCTCCTTGAAGTCCTCCTCAA
AACCCCTCAATAATCCCAGGCAATGGCGCAGCAAGTGCGGAGATCGGCCACCGTCTTCTTCACCTCCGGTTGCCGTCGCCATTGTCGTTTCCGCCTCCTC
CGCAGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGCAGAAGGACGCCGTCGCCGGGAGGATGCGCGAGCCGTTGCTGTCACCAAGACCCCGGAAA
ACTTCAACCTAACCCGCGATGATTGCTTAATCGGTGAAGAAGTGATTTAGGTGCTGACTTTTTCCAGTTACAAGGTTTTAGATTTAGTCTTTGAGTGATG
CGGGTAATCGACTGCTTCTTCTAGGACTTGAACTTAATGGGGTAAACCCTTAGTCGGTGTGCTTGTGGATTGGGTGGACAAGCTTCTGTTGTTCTCTCAT
ATGTCTATTTGGCCGGTCGGCCTATGTAATTATTAAGTTGTTGTAAGTCTTAAGTTTCTTTCATCTTAGTTGTGTTTGCTATGTATAATCATGCTTAAGA
TAAAAGTGTGGATCTAGTGCACATCCTAGGAACTAGATTCACATGAGTATGAGTTAGGAATATTTGAGAGGTTGTAGATCTTTAGCCATTTTGTCAAGTC
TCCTGAATGTGTAACACATCTGGTCGCCACCTTCGAGTGGTTTGACGGGCATATCTCAGGCTGAAGTTGACTGGC