Detailed information on CNT30369182


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 2e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696234Oryza glumipatulaOryza sativa49.0545.4794.9412forward
CNT30186748Oryza glumipatulaSecale cereale48.3348.1691.38406forward
CNT30394956Oryza glumipatulaTriticum turgidum47.8644.9291.29402forward
CNT30665775Oryza glumipatulaTriticum dicoccoides48.6948.6991.2409forward
CNT30685463Oryza glumipatulaTriticum urartu48.3345.6290.39406forward
CNT30368027Oryza glumipatulaSorghum bicolor48.2138.1791.36405forward
CNT30596913Oryza glumipatulaOryza meridionalis47.024896.2395forward
CNT30582922Oryza glumipatulaEchinochloa crusgalli47.8644.8291.29402forward

Expression of CNT30369182

Peptides detected in this lncRNA

>peptide 1 (78 aa)
KQANFIINSQHHISLIRFRTCTEIHTTGTDLTLSPILVHPSTRSTRIRTSIRYTYVHLLHRVHTRTLSCRDAHRRQPS*

>peptide 2 (35 aa)
MRGHGSTAAAALTCRGRSWWSARMLCAWIKLGLPR*

>peptide 3 (38 aa)
MAARRRRRSLAGDEVGGRRGCSARGSSSGCRGSRARPR*

>peptide 4 (48 aa)
MVMRPSPNTFAAALPASAGEERAMVAAAMSTSLAASSSAAAAAGVCVRA

Sequence

>CNT30369182
AAACAAGCTAATTTTATAATTAATTCACAACACCATATTTCATTGATCAGGTTCAGAACCTGCACAGAAATACACACTACCGGTACAGATCTCACCCTCT
CTCCAATACTCGTACATCCATCCACGCGGTCCACACGAATACGTACATCTATACGGTACACGTACGTACATCTACTGCACCGCGTACACACACGCACACT
CTCCTGCAGAGACGCGCATCGTCGTCAACCTAGCTAGCTTAGCTGAAGGCGATGCGTGGCCATGGCAGCACGGCGGCGGCGGCGCTCACTTGCCGGGGAC
GAAGTTGGTGGTCGGCGAGGATGCTCTGCGCGTGGATCAAGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGACCCCGCCTTGAA
CCACACCGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGGAGCTCCGGGAACACGCAGCCCAGCGCGCCGAGCATCGCCCACCTGGAGTGGATCACCTCC
AGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTCGGCGGCT
CGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGCGGCGGGCTTGGGCTTCGCCGCCGACTTGCGCATGGTGAT
GCGCCCCTCGCCGAACACCTTCGCGGCGGCCTTGCCGGCCAGCGCCGGGGAGGAGAGGGCCATGGTGGCGGCGGCCATGTCTACCTCGCTTGCTGCTTCA
AGCTCAGCTGCTGCTGCTGCTGGGGTGTGTGTGCGTGCTG