Detailed information on CNT30369029


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30434125Sorghum bicolorPapaver somniferum66.8594.3495.51067reverse complement
CNT30117001Sorghum bicolorOryza nivara79.4580.2599.681268forward

Expression of CNT30369029

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MDFSRSTGRRTAFYTAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRAY*

>peptide 2 (53 aa)
MMLSHANVSRAMACFEHSNFFKVTAPEARPGQLRPGAHRRQKGPTTSFLTATT*

>peptide 3 (44 aa)
SPTETLLRLLLPLDDQVPWTSREVRGGEPPSTPRSEHFTGPFNR*

>peptide 4 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPINHYSDPEGQHNRTGIL*

>peptide 5 (43 aa)
MIRFHGLLAKYGAANRLLHRDPNTSPDHSIGRSDGRCVQRAGT*

>peptide 6 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

>peptide 7 (30 aa)
MMCRRHEGRAIRQVIMNHRISEQSPRQPFI*

>peptide 8 (30 aa)
MRPSRKSGFVARISSRITTVIRVARTIKQTI

Sequence

>CNT30369029
GTTCACCTACGGAAACCTTGTTACGACTTCTCCTTCCTCTAGATGATCAGGTTCCATGGACTTCTCGCGAAGTACGGGGCGGCGAACCGCCTTCTACACC
GCGATCCGAACACTTCACCGGACCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTT
ACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATATAC
TCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAACGGCCATAGT
CCCTCTAAGAAGCTAGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA
AGAAAGAGCTCTCAGTCTGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACGCCTGGTGGTGCC
CTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAA
CATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATAAAAACATC
CTTGGCAAATGCTTTCGCAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTATTAATCATTA
CTCCGATCCCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTGCTTTGAGCACTCTAATTTCT
TCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAATTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGTCCAACTACGAGCTTTTTAACTGCAACAACTTA
AATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTA
CCAGACACTAACGCGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC
CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGA
AATTTGAATGATGTGTCGCCGGCACGAGGGCCGTGCGATCCGTCAAGTTATCATGAATCATCGGATCAGCGAGCAGAGCCCGCGTCAGCCTTTTATCTAA
TAAATGCGCCCCTCCCGGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCACGTACCATCAAACAAACTATA