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Detailed information on CNT3036892


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201820Cucumis meloPisum sativum29.7257.8695.37324forward
CNT30229065Cucumis meloAnanas comosus23.2169.1395.26253forward
CNT30622952Cucumis meloDaucus carota7.7135.995.2484reverse complement
CNT30153321Cucumis meloPrunus persica10.7324.1294.87117reverse complement
CNT30425623Cucumis meloPapaver somniferum20.2848.4693.67221forward
CNT3053197Cucumis meloAmborella trichopoda29.5420.1592.55322forward
CNT3025558Cucumis meloPopulus trichocarpa15.4120.7496.43168forward
CNT30147748Cucumis meloBrachypodium distachyon30.4649.2694.88332forward
CNT3049043Cucumis meloCucumis sativus22.4847.1297.14245forward

Expression of CNT3036892

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRFPNIMLRIARFPEEDAIRLMRNKKEYRKFEWLKLMQLRSK*

Sequence

>CNT3036892
GGGAAATTATCCAAGTGGTACCTCTTCTCTAGAGGCTCATAGCTAGGATAATGAAGAAATATAGAAGAGCATATAAGTTATCATGCTTGCATATCCACCA
TTTGAGTCTCCAACAATTATTCCGATAATTACATATCCGATTTGACCGATGGACGAATACGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAATGA
GATTCCCTAATATCATGCTAAGAATAGCTAGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAAAATTCGAGTGGCTGAA
GCTGATGCAGCTACGTTCGAAATAACAGAAAGAAAAGCAACGACTGGAGTGGGAGAGTCAGAGTCGAAAAGAGGATTCCTCGATTCTTTTGTGTCTCAAT
TATTTTCTTATTTCACATTTATGAAATAGTTTCTTAACCAAAAAAAAGGAGGCAGAGAGAGTTGTCAGATTCCTTCAGAAGATCTACTTCAAACACTGAG
AGTCCCCAATAAAAATCTTGAACATAGTGTTCCTATTGACAAAGAGAACCTACAATCTTAGATTCTTAAGAACAAGAAGGAAAAGGAAAACTCAAATTCT
ACACAGTAACATAACCAAGAGAGAACAAGATCCCGAATTTACAAAAGGGTGGATTCGGTGTTCCCATCCCCTCTCTCTGTACTAAAAAAGAAAAGTTAAA
AAAAAGAAGGCCAAAGGAAAAGGAGCTTTGCTACTGTTACTGTCGCTGTGCTCTCATAACCCTTTGTAACACACCAAAGAAAAAAAAAAGTTCTTTTTTT
CTTTTTCTTTTTGCAAAATATAGAAAAGGGAAATTAATGGAAATACATCGACGGACCCATAAGGACAACAAAAACAGACCTACTAGAGAAGAAATGCAAT
AGCTAATTAGGGATGGCTGAGGACGCCTAAATCTTAACAAACTTTGTTAAGCATAACAATAAGTCCATTGCTCGGCATCACCAGCACCAGAATCCACAGC
ACCATTGTAATCAGTCTCACTGCAGCAGGAAGATGCACTCGACAAATAAGGCATATTGCGAAAGGACATGGCCAAGCTATTAGCTATGCC