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Detailed information on CNT3036889


BLAST search results

BLAST vs Swiss-Prot:
sp|P60113|ATP9_BRANA, E-value = 3e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550185Cucumis meloIpomoea triloba14.0257.2188.02242forward
CNT3020733Cucumis meloCitrullus lanatus7.3627.6791.34127forward
CNT3047959Cucumis meloPrunus dulcis6.3220.4185.32109reverse complement
CNT30221525Cucumis meloHordeum vulgare13.3827.4787.01231forward
CNT30628273Cucumis meloDaucus carota12.9236.6283.41223forward
CNT30687678Cucumis meloTriticum urartu13.3829.3587.88231forward
CNT30104673Cucumis meloOryza rufipogon13.1532.3885.9227forward

Expression of CNT3036889

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKLLRTLNNILADSRKKERVILVPEENDGSGSLVVKVRLKSSI

>peptide 2 (46 aa)
MEYEPVLQTSLILTEVSTERRVRSARERSEANTRASAGAEQYDIWA*

>peptide 3 (50 aa)
MDSIKGLSIGYEITQLIRIKELSQNFQAHSFLIQLEGALKKIRRGAKPLD*

Sequence

>CNT3036889
AAAAGCTCTAGATGAGAGACGGAAGTAGCTCGACCATAGGAAGAGGGATGAATTTTTGATGTTCAAGATGTGAGACTGAAACCTTTTCGATCGGAATACA
AATTAGATCAAAAAGGCCATCATTAGAGCAAACAATGCAATAGCTTCAATTAGAGCAAAGCCCAAAATTGCATAACCAAATGATTTTTTAGCCAATGATG
GATTTCGCACCACGGAATGGATCAATGAACTGAAGACGTTTCCAATACTGACAGCAGCTCCCGCTGAAACGATTATAGTAGCTCCGACACCCACTAATTT
TACACCTTCTAACATCTCAAATTCTTTGGTCCTCACGCTTTTTGATTGAAAAAAAGATGAAAAGACAACCAGGAGGCAAGGGAGAAGAAGAAAATCAAGC
CTAAAGAAGAGATAAAAGTGGAATCAACTCCAAGCCTATCAAGGCAATGAACAAGGGCTCGCATTAAGCTATCACCTGGACCTTTGTTTTTGGAACAGGT
TAATATGGATAGTCAAGAGGAGCGAAAGCAGCTCGACTGTCAGGAGAGGAGCTGTAGTTAGGAGTCTGAAGGTCGGGTTAGTGGAATTTTCTTCATTGCA
CTCCTTTTCATTGGATTTGAAGGATAAGGACTTTCACTTTCATTCAACTCCTACTCCGCCTCTCCTTTTAGATTCATATGGATTCAATTAAGGGTCTGTC
TATAGGTTATGAAATAACTCAACTGATAAGGATCAAAGAATTATCTCAGAATTTTCAAGCTCATTCCTTCCTTATCCAATTAGAAGGAGCCCTCAAGAAA
ATAAGGAGAGGGGCGAAGCCACTCGACTGAGGTTAGGAAGGAGAGGGGCGAAGCGAATTCCTTATCAAAGAATTTGAGAAATCCATATTCAAAGCGGGTT
AGTGGAATTTCATGAGTTGCACTCCTAATAAGGGATAAGGAAGTCCTTATTCAATGAGCTTTGAACCTCTCATCATTTTGAGTCGAGTTATTTCATAACC
TCCGGACAGGTTAATATGGATATAAATCAGTCCTTCGGACCAGTCCTCCGGACGTGAAGAAGAAGATCGACTGTGAATATGGATATAAACAAGGACTGAG
GGCCTCCCGTAGAAGGAGTCATGAAATGGAATATGAACCCGTCCTCCAGACCTCTTTGATCCTAACGGAGGTCTCGACTGAAAGGAGAGTGAGGAGTGCG
AGAGAAAGAAGCGAAGCGAATACTCGTGCAAGTGCTGGAGCCGAGCAATATGATATTTGGGCTTAAAGGAAGTGAAAGGAAGATAGGCTTTCTTTTACTA
AAAACCTCAAAATAATCGGAAAGCCTAGCCTTCTACGTCCTCCTGATTCTTCCCCTCGTTCCTTTGATCTTGGGCATCTCACTTGGAATGCTTATGCATT
CTTTTCGATCTTGTACTGAGGCTTCACACCAACCCAATCTCGACGAAAAAAAGCGAACTTATTAAAACTAGATAAAAAATCAGTGACGTGAACAACTCCT
TTCTTGGAACTAATGAATAGAGGGCAAGGTGTTCACACTATATAGAAAAATAGAAGAAGCGTGCGATACAAAGCATCAACCTACGGAAGAAGTCCAATGA
AATTACTCCGTACTTTAAACAATATATTAGCCGACTCAAGAAAGAAAGAAAGAGTGATCCTCGTTCCAGAAGAAAATGACGGTTCTGGCAGTCTTGTAGT
GAAGGTGCGCTTAAAGTCTTCTATAA