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Detailed information on CNT30368855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K7E6|ERF1_ORYSJ, E-value = 4e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375420Sorghum bicolorArabidopsis thaliana10.5728.3587.572forward
CNT30559952Sorghum bicolorActinidia chinensis23.222.0781.01158forward
CNT30475741Sorghum bicolorSaccharum spontaneum49.0564.1191.62334forward
CNT30686876Sorghum bicolorTriticum urartu24.9640.3887.65170forward
CNT3035635Sorghum bicolorCucumis melo24.0842.7179.27164forward

Expression of CNT30368855

Peptides detected in this lncRNA

>peptide 1 (42 aa)
QVLVAGASTSVETSRHGHVIKAPKVHVANHILGSITAQKSVD*

>peptide 2 (29 aa)
MLLTAGLIIGFSSKSISGTFRGVGPARCF*

>peptide 3 (56 aa)
MGMSSKLQRSMLLTTSWDPSQLKRVLIESSEPLSIRKFIYGSNSVRSTLAFPINGG*

Sequence

>CNT30368855
TACAAGTACTAGTCGCTGGGGCCTCAACCTCAGTAGAAACCAGCAGACATGGGCATGTCATCAAAGCTCCAAAGGTCCATGTTGCTAACCACATCCTGGG
ATCCATCACAGCTCAAAAGAGTGTTGATTGAGTCCTCTGAACCACTGTCCATCAGGAAATTCATATATGGATCCAACTCTGTGAGATCAACACTAGCATT
CCCCATCAACGGAGGCTGAAGTCTGAGCAACTGAAGGAGTTGCTACCTTGGTCTGAGGACAGGTTCACGAAAGGTTCCTGAATGGGAGCAGCAGAATTCA
CGAAAGGAGCAAATGACATGTTTTGAGTATGCATAAATGGCTCGGGTATGTTGTGGTCGACAACAGGGTAGTGATATGCATTTGAGTTGGTCATGTTGTT
GACTGCCGGCTTGATAATCGGCTTCTCTTCAAAGTCCATCTCAGGCACTTTCAGAGGGGTAGGACCAGCACGGTGCTTCTGAGGAATCGTCGAAACCTCA
TCTGGGAAGTTGACTTTAGCCTTCTTGCCACGGATCCTGCGTGCCTCAGCATCATAAGCCCTGGCAGCTTCTTCGGGAGAGTTGAAAGTACCAAGCCAAA
CACGAACACCTTTGCGAGGATCTCTGATCTCAGCAGCCCATTTACCCCATGGGCGCCGGCGGATACCCCTAAACTGGTTCT