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Detailed information on CNT30368741


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30191529Sorghum bicolorSecale cereale79.1153.3887.88924forward
CNT30242826Sorghum bicolorAvena sativa78.673.4486.93918forward
CNT30476294Sorghum bicolorSaccharum spontaneum96.7587.0693.891130forward
CNT30142111Sorghum bicolorLolium perenne78.674.2788.02918forward
CNT30685147Sorghum bicolorTriticum urartu78.675.7488.02918forward
CNT30595796Sorghum bicolorOryza meridionalis78.3470.7185.79915forward
CNT30593897Sorghum bicolorEragrostis curvula78.681.7586.6918forward

Expression of CNT30368741

Peptides detected in this lncRNA

>peptide 1 (33 aa)
RPDGHPIVLSVTYPIDAQITQGKFHSRQSKRNS*

>peptide 2 (53 aa)
MPSLSWIFAFTLSMVSDDSTSSVMVFPVRVFTKICMPPRRRSTKWRVDSFWIL*

>peptide 3 (88 aa)
METHPGQLKRAHHPVNHQGEQLHFTDHHGGAAPGGAWTPSGYCSLQACGHPPAAYQQRSGAAGLVGCPPCPGSSPSHCQWCQTTRPPA*

Sequence

>CNT30368741
CCGGCCAGATGGCCACCCAATAGTTTTGAGTGTTACGTATCCAATAGATGCACAGATAACACAAGGTAAATTTCATAGCAGGCAATCAAAGAGAAATAGC
TAAGGCAAACCAAGTTAACCTGCTGCTGCACCACAGCTCAAGTTTGCAGGACTCGACATCACAGTAGAAACACACGGTATGGAAACACACCCAGGACAAC
TAAAAAGAGCACACCACCCAGTGAACCACCAGGGCGAACAACTTCACTTCACTGACCACCACGGAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGG
ATATTGTAGTCTGCAAGCGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTCG
CCTTCACATTGTCAATGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCTTCCCAGTCAGGGTTTTCACAAAGATTTGCATGCCACCACGGAGGCGGAG
CACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGAGTGCGGCCATCTTCTAGTTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCCGGT
GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATCGTGTCCGAGGACTCAACCTCTAGCGTGATGGTCTTTCCAGTCAAGGTCTTAACAA
AGATCTGCATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCAGCCAAGGTACGGCCATCCTCAAGCTGCTTGCC
AGCGAAGATTAAGCGCTGTTGGTCTGGAGGGATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCGATTGTATCAGAGGACTCAACCTCGAGAGTG
ATAGTCTTCCCGGTGAGGGTCTTGACGAAGATCTGCATGCCACCCCTAAGCCTGAGCACGAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCAGCGA
GCGTCCGCCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAAT
TGTATCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATCT