CANTATAdb - search

Detailed information on CNT30368619

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-138

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693865	Sorghum bicolor	Oryza sativa	78.77	71.86	85.37	909	forward
CNT30674319	Sorghum bicolor	Setaria viridis	71.06	82.25	86.46	820	forward
CNT30553671	Sorghum bicolor	Oryza glaberrima	78.77	78.16	85.37	909	forward
CNT30242602	Sorghum bicolor	Avena sativa	78.77	79.53	87.24	909	forward
CNT3067522	Sorghum bicolor	Leersia perrieri	78.34	73.14	85.18	904	forward
CNT30689826	Sorghum bicolor	Triticum urartu	78.77	54.5	88.12	909	forward
CNT30722025	Sorghum bicolor	Triticum spelta	57.02	74.27	88.91	658	forward
CNT30338865	Sorghum bicolor	Eragrostis tef	78.94	73.53	88.36	911	forward
CNT30110940	Sorghum bicolor	Oryza longistaminata	78.42	33.37	85.64	905	forward
CNT30116852	Sorghum bicolor	Oryza nivara	78.77	76.52	85.48	909	forward
CNT30604126	Sorghum bicolor	Oryza punctata	77.9	78.52	84.54	899	forward

Expression of CNT30368619

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVKVLTKICMPPLRRRTRWRVDSFWIL*

>peptide 2 (53 aa)
MPSLSWIFAFTLSMVSDDSTSSVMVFPVRVFTKICMPPRRRSTKWRVDSFWIL*

>peptide 3 (31 aa)
DGHPIVLSVTYPIDAQITQGKFHSRQSKRNS*

>peptide 4 (88 aa)
METHPGQLKRAHHPVNHQGEQLHFTDHHGGAAPGGAWTPSGYCSLQACGHPPAAYQQRSGAAGLVGCPPCPGSSPSHCQWCQTTRPPA*

Sequence

>CNT30368619
CAGATGGCCACCCAATAGTTTTGAGTGTTACGTATCCAATAGATGCACAGATAACACAAGGTAAATTTCATAGCAGGCAATCAAAGAGAAATAGCTAAGG
CAAACCAAGTTAACCTGCTGCTGCACCACAGCTCAAGTTTGCAGGACTCGACATCACAGTAGAAACACACGGTATGGAAACACACCCAGGACAACTAAAA
AGAGCACACCACCCAGTGAACCACCAGGGCGAACAACTTCACTTCACTGACCACCACGGAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATATT
GTAGTCTGCAAGCGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC
ACATTGTCAATGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCTTCCCAGTCAGGGTTTTCACAAAGATTTGCATGCCACCACGGAGGCGGAGCACCA
AGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGAGTGCGGCCATCTTCTAGTTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGTGGGAT
GCCCTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCGATCGTGTCAGAAGACTCGACTTCAAGTGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATC
TGCATACCTCCCCTGAGGCGAAGGACGAGGTGGAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCTAAGGTGCGACCGTCCTCAAGCTGCTTCCCTGCAA
AGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATCGTGTCCGAGGACTCAACCTCTAGCGTGATGGT
CTTTCCAGTCAAGGTCTTAACAAAGATCTGCATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCAGCGAGCGTC
CGCCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATTGTAT
CCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGA