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Detailed information on CNT30368600


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-112

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30475689Sorghum bicolorSaccharum spontaneum90.998.9188.07729forward
CNT30550711Sorghum bicolorOryza brachyantha65.0974.5788.7522forward

Expression of CNT30368600

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSEDSTSKVIVLPVRVFTKICIPPLSLSTR*

>peptide 2 (40 aa)
MVSEDSTSSVMVLPVRVLTKICIPPLSLSTRWRVDSFWML*

>peptide 3 (61 aa)
MGSASDRQTRAKTRPGLKPQNTMTDGLLISGDPQGTSTTLVNPGTTQPSRTYWPPRRRSTR*

Sequence

>CNT30368600
CCATGAACAAACATAGCCACAACTTCAGGGTTCACTTATTCTTCATTCCATAGTTCGACCAAACTGCTGCACAGCAGCAAGTGTTCACAAATAACCAGAC
AACATCGGACTCAACATGGGCTCTGCATCAGACAGGCAAACAAGAGCCAAGACTCGACCAGGACTCAAACCACAGAACACGATGACAGACGGTCTCCTAA
TCTCAGGAGACCCACAAGGCACCAGCACCACACTTGTGAACCCAGGGACAACACAGCCCAGCAGAACTTACTGGCCACCACGGAGGCGGAGCACCAGGTG
AAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGGGGGATGCCC
TCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATGGTATCCGAGGATTCAACCTCCAAAGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCA
TACCACCCCTGAGCCTGAGCACAAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGACCATCCTCGAGCTGCTTCCCAGCAAAGAT
AAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTATCAATGGTGTCTGAGGACTCGACCTCAAGCGTGATGGTCTTG
CCAGTGAGGGTCTTGACGAAGATCTGCATACCACCCCTGAGCCTGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGC
CG