Detailed information on CNT3036858


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30273043Cucumis meloChenopodium quinoa36.148.2582.52206forward
CNT30381337Cucumis meloManihot esculenta32.1115.182.51183forward
CNT30631336Cucumis meloVigna unguiculata20.1848.5286.96115forward
CNT30261311Cucumis meloBrassica rapa29.343.8380.24167forward
CNT30477141Cucumis meloArabidopsis halleri20.3542.6581.9116forward
CNT3029174Cucumis meloTheobroma cacao31.9318.1579.12182forward

Expression of CNT3036858

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MEAKRFPQVAFDSSIAKIPRPGDATVFCNNTTQVERLILRSVTILKNLCLFTLILFL*

Sequence

>CNT3036858
TCTCGCCATCGACGGTGGATTGGTAGAGAGTCTCTTCAAAGAGGATAGCACCTGAGATGTACTTGCCGAGTTCGGGTGCAGTTACGAGAAGAGTTCTGTA
AGCTTGACGGTTAGCCTCTGTGTTTTCTAATCCAATGGAAGCCAAACGCTTTCCACAAGTTGCATTTGACTCATCCATAGCCAAAATTCCACGTCCTGGA
GACGCCACAGTTTTCTGCAACAACACAACACAAGTTGAAAGATTAATACTTCGTTCGGTAACGATTTTAAAAAACTTATGTTTATTTACTCTCATCTTGT
TCCTATAGTTTTCAAGTCTCTTTAACAATAAAATAACGCAGCAACACAGAATTTATACGTACGGCGGTTTTGACCAACTCATCAATGTAAGAGCCAGCGC
GGACGGTGAGAGTGGAAGGGGCGGCGAAGCAGAAGCAGAAGCCATTGAAGAGTTGAATTGAAGAAGAAGGAAGAGGTTGAACACAGACTTGAGAAACGAA
GGGTAAGGTTCAAAAAAATCTTATCTTTTTTGCTTCTTCACCAACGCTCTCTGATCTGGTTGCTGCCTCC