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Detailed information on CNT30368559


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674191Sorghum bicolorSetaria viridis63.7278.8289.48599forward
CNT30476368Sorghum bicolorSaccharum spontaneum95.9653.9292.57902forward

Expression of CNT30368559

Peptides detected in this lncRNA

>peptide 1 (88 aa)
METHPGQLKRAHHPVNHQGEQLHFTDHHGGAAPGGAWTPSGYCSLQACGHPPAAYQQRSGAAGLVGCPPCPGSSPSHCQWCQTTRPPA*

>peptide 2 (33 aa)
RPDGHPIVLSVTYPIDAQITQGKFHSRQSKRNS*

>peptide 3 (30 aa)
MVFPVKVLTKICMPPLRRRTRWRVDSFWIL*

>peptide 4 (53 aa)
MPSLSWIFAFTLSMVSDDSTSSVMVFPVRVFTKICMPPRRRSTKWRVDSFWIL*

Sequence

>CNT30368559
CCGGCCAGATGGCCACCCAATAGTTTTGAGTGTTACGTATCCAATAGATGCACAGATAACACAAGGTAAATTTCATAGCAGGCAATCAAAGAGAAATAGC
TAAGGCAAACCAAGTTAACCTGCTGCTGCACCACAGCTCAAGTTTGCAGGACTCGACATCACAGTAGAAACACACGGTATGGAAACACACCCAGGACAAC
TAAAAAGAGCACACCACCCAGTGAACCACCAGGGCGAACAACTTCACTTCACTGACCACCACGGAGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGG
ATATTGTAGTCTGCAAGCGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTCG
CCTTCACATTGTCAATGGTGTCAGACGACTCGACCTCCAGCGTGATGGTCTTCCCAGTCAGGGTTTTCACAAAGATTTGCATGCCACCACGGAGGCGGAG
CACCAAGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCCAGAGTGCGGCCATCTTCTAGTTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCCGGT
GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATCGTGTCCGAGGACTCAACCTCTAGCGTGATGGTCTTTCCAGTCAAGGTCTTAACAA
AGATCTGCATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTAGACTCCTTCTGGATATTATAATCAGCGAGCGTCCGCCCATCCTCAAGCTGCTTGCC
AGCAAAGATCAGACGCTGCTGATCCGGCGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATTGTATCCGAGGACTCAACCTCGAGGGTG
ATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATCT