Detailed information on CNT30368472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694484Sorghum bicolorOryza sativa22.7217.9391.7597forward
CNT30673933Sorghum bicolorSetaria viridis2617.3794.59111forward
CNT30398657Sorghum bicolorTriticum turgidum11.7120.169650forward
CNT30554101Sorghum bicolorOryza glaberrima22.7215.1691.7597forward
CNT30474747Sorghum bicolorSaccharum spontaneum41.9217.1198.32179reverse complement
CNT30140884Sorghum bicolorLolium perenne23.1927.7387.8899forward
CNT30349214Sorghum bicolorEragrostis tef23.6514.0790.1101forward
CNT30370564Sorghum bicolorOryza glumipatula22.7220.0491.7597forward
CNT30102264Sorghum bicolorOryza rufipogon22.7214.1891.7597forward
CNT30576633Sorghum bicolorOryza barthii22.7219.3691.7597forward
CNT30117076Sorghum bicolorOryza nivara22.7219.2191.7597forward

Expression of CNT30368472

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MLADDDNGNSNLGTSGRLCWSSVATHQTRSKTTRRWRQQGALSVIARQK*

Sequence

>CNT30368472
CAGAGCAACAATATATAACACAAAAAGGATATCGAACACAATGATTACTTAATCTAACATTACCCAAACTGATATTATCACAATGTTAGCCGATGACGAC
AATGGAAACAGTAATCTAGGTACAAGCGGGCGTCTCTGCTGGTCCAGTGTGGCCACACACCAGACCAGAAGCAAAACCACCCGCCGGTGGCGCCAACAAG
GAGCGCTATCCGTTATAGCACGACAAAAGTAAAAACATCACGATGTGAAGTGAAACTGAATAATTCTAGTACATGGATATAGGCTCCTTATAGTTTTTCG
CCACAGGGCCTTTCTGTCGCAGCTCCATTGTTGGACAAAGCATGGTCCATCGTCTCAGAGCAAGCTCCATCACTCGTCATCGTCTTCGTCCTGCAAACAA
AGGGGGAAGACAGATCTTAAGACTTGC