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Detailed information on CNT30368415


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41784|TBB7_MAIZE, E-value = 6e-92

BLAST vs NONCODE:
NONBNAT007651, E-value = 3e-68

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Sorghum bicolorOryza sativa32.9459.1686.73339forward
CNT30673843Sorghum bicolorSetaria viridis40.5291.6591.85417forward
CNT30377201Sorghum bicolorArabidopsis thaliana34.3161.7186.97353forward
CNT30728063Sorghum bicolorCorchorus capsularis54.0364.0681.12556forward
CNT30381383Sorghum bicolorManihot esculenta31.9718.7382.98329forward
CNT30402401Sorghum bicolorBeta vulgaris43.9338.0584.07452forward
CNT30196370Sorghum bicolorPisum sativum35.7638.6182.88368forward
CNT30710178Sorghum bicolorGlycine max27.7967.4583.22286forward
CNT30562824Sorghum bicolorActinidia chinensis50.3493.1781.66518forward
CNT30542792Sorghum bicolorBrassica napus38.190.3283.42392forward
CNT30261872Sorghum bicolorBrassica rapa38.9745.3181.55401forward
CNT30614070Sorghum bicolorArabis alpina34.0125.3386.29350forward
CNT3015820Sorghum bicolorZea mays42.4795.6293.14437forward
CNT3041960Sorghum bicolorChlamydomonas reinhardtii20.9963.3485.65216forward
CNT30627268Sorghum bicolorDaucus carota34.892982.17359forward
CNT30681848Sorghum bicolorTriticum urartu31.136.1686.25320forward
CNT30341625Sorghum bicolorEragrostis tef36.0538.0589.22371forward
CNT30370171Sorghum bicolorOryza glumipatula35.7643.486.14368forward
CNT30433292Sorghum bicolorPapaver somniferum33.1432.5482.11341forward
CNT3021874Sorghum bicolorPopulus trichocarpa36.3567.2783.96374forward
CNT30322043Sorghum bicolorAsparagus officinalis40.3349.5882.17415forward
CNT30119164Sorghum bicolorCitrus clementina30.7167.8184.49316forward
CNT30330123Sorghum bicolorDioscorea rotundata27.8928.1986.06287forward
CNT30150001Sorghum bicolorBrachypodium distachyon10.9835.7688.5113forward

Expression of CNT30368415

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MEFCHSNITSISNTTHLVVPNITTTRTSIDSY*

>peptide 2 (51 aa)
MLRTSSAQWVGCRTRSTSHCWGSTPQSRKSSCSERSASVHPLPWCSSSHGT*

>peptide 3 (31 aa)
MQEGLPPEHSCELLTDAAEHLLDGGGVADEC*

>peptide 4 (75 aa)
MLLSASVNSISSMPSPVYQCKKAFLLNIAVNCSLTRRNISWMEVELPMNVEDIFSPMGGMSHTLDFTLLGIHSTK*

Sequence

>CNT30368415
TTCACACGAACTGCTGATAAACCATCATTTAACACAGTAGAATTCTCTAATACCACATAAACCACTTGAACTGATGCATAAGGCATAGCAACAATCAGTT
AAGCTACCTTCCACCTCATGGTAATAACAACTTGGGGACAACCATAATACAAAAGGAAATGGAGTTTTGTCACAGCAACATCACATCCATAAGCAATACC
ACCCATCTAGTAGTACCTAACATCACCACCACACGCACCTCAATCGACTCATACTGACTAACAGCGATACAAGGGATATCATCTCTCATCTCTGTACCAA
GCACTGCAGAGGATGGCTTAGTCAGCGTGCTCTTCCTCTTCTTCCTCCTCATACTCCTCATCGTCCTCGGCCGTGGCATCCTGGTACTGCTGGTACTCAG
CCACCAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCATCCATGCCCTCACCAGTGTACCAATGCAAGAAGGCCTTCCTCCTGAACATAGC
TGTGAACTGCTCACTGACGCGGCGGAACATCTCCTGGATGGAGGTGGAGTTGCCGATGAATGTTGAGGACATCTTCAGCCCAATGGGTGGGATGTCGCAC
ACGCTCGACTTCACATTGTTGGGGATCCACTCCACAAAGTAGGAAGAGTTCTTGTTCTGAACGTTCAGCATCTGTTCATCCACTTCCTTGGTGCTCATCT
TCCCACGGAACATAGCAGACGCTGTGAGGTAGCGGCCGTGGCGAGGGTCAGTGGAGCAAATCCAACCATGAAGAAGTGGAGACGCGGGAAGGGGATCAGG
TTCACAGCAAGCTTCCGGAGGTCAGAGTTGAGCTGACCAGGGAAGCGAAGGCAGCACGTAACACCACTCATGGTTGCAGAGATGAGCTCGGCGCCCTCGG
TGTAGTGTCCCTTGGCCCAGTTGTTTCCGGCGCCGGATTGGCCGAAGACGAAGTTGTCGGGGCGGAAGATCTGGCCGAAGGGGCCCGAGCGCACGGAGTC
CATGGTCCCCGGCTCGAGGTCCATGAGGA