Detailed information on CNT30368346


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YH64|CATA2_ORYSI, E-value = 9e-54

BLAST vs NONCODE:
NONCQUT006985, E-value = 3e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317874Sorghum bicolorCorylus avellana81.1189.7585.39219forward
CNT30373064Sorghum bicolorArabidopsis thaliana42.2219.9682.46114forward
CNT30526368Sorghum bicolorPhaseolus vulgaris35.195.9787.3795forward
CNT30708847Sorghum bicolorGlycine max67.4118.9483.52182forward
CNT30398713Sorghum bicolorTriticum turgidum92.2291.5490.36249forward
CNT30567579Sorghum bicolorActinidia chinensis46.336.4485.6125forward
CNT3085325Sorghum bicolorVigna radiata59.6322.7783.85161forward
CNT30511681Sorghum bicolorSolanum lycopersicum76.6762.3583.09207forward
CNT30668910Sorghum bicolorTriticum dicoccoides92.2288.6190.36249forward
CNT30611006Sorghum bicolorArabis alpina42.2237.584.21114forward
CNT308572Sorghum bicolorZea mays98.8992.0798.13267forward
CNT30714890Sorghum bicolorMalus domestica golden8076.8785.65216forward
CNT30624536Sorghum bicolorDaucus carota59.6311.4688.2161forward
CNT30359648Sorghum bicolorLactuca sativa62.9643.5982.94170forward
CNT30369978Sorghum bicolorOryza glumipatula34.0712.2582.6192forward
CNT30704829Sorghum bicolorPrunus avium38.5216.7587.5104forward
CNT3051600Sorghum bicolorAmborella trichopoda28.522085.7177forward
CNT30119031Sorghum bicolorCitrus clementina75.5626.8883.82204forward

Expression of CNT30368346

Peptides detected in this lncRNA

>peptide 1 (87 aa)
SIPVDQGVELDSKTTWIPQGLGASTLMHNCREPDNNRCLDPRSPEKISTCKVRDIMSDLKETLGTGSPCMHNTFRDTFPVELSKLFD*

Sequence

>CNT30368346
TCCATCCCTGTTGATCAAGGTGTAGAACTTGACAGCAAAACCACGTGGATCCCTCAAGGTCTCGGGGCTTCCACGCTCATGCACAACTGTAGAGAACCGG
ACAATAACAGGTGTCTGGACCCCAGGAGCCCGGAGAAAATCAGCACATGTAAGGTGAGAGATATCATGAGTGACCTCAAAGAAACCCTTGGCACTGGCTC
CCCGTGCATGCACAACACGTTCAGGGATACGTTCCCTGTCGAACTGAGCAAGCTTTTCGATTAGATGATA