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Detailed information on CNT30368046


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ARZ9|R27AA_ORYSJ, E-value = 5e-47

BLAST vs NONCODE:
NONBNAT005965, E-value = 1e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674447Sorghum bicolorSetaria viridis30.3327.7895.14185forward
CNT30530180Sorghum bicolorEucalyptus grandis29.1833.7896.07178forward
CNT30316655Sorghum bicolorCorylus avellana37.0571.7595.13226forward
CNT30545885Sorghum bicolorIpomoea triloba36.7249.3491.52224forward
CNT30628786Sorghum bicolorVigna unguiculata36.8945.9293.78225forward
CNT30178120Sorghum bicolorSecale cereale42.7929.1994.25261forward
CNT30285265Sorghum bicolorTriticum aestivum42.7934.7196.17261forward
CNT30220581Sorghum bicolorHordeum vulgare42.7935.1895.79261forward
CNT30586129Sorghum bicolorMusa acuminata37.0542.4892.04226forward
CNT30435195Sorghum bicolorAegilops tauschii42.7945.0896.17261forward
CNT30241998Sorghum bicolorAvena sativa42.7932.9596.17261forward
CNT30656101Sorghum bicolorTriticum dicoccoides42.7935.0396.17261forward
CNT30456592Sorghum bicolorSaccharum spontaneum36.7227.2595.54224forward
CNT30130551Sorghum bicolorLolium perenne42.7938.3396.93261forward
CNT3067544Sorghum bicolorLeersia perrieri42.6215.8195260forward
CNT30720017Sorghum bicolorTriticum spelta42.7931.696.17261forward
CNT30341903Sorghum bicolorEragrostis tef42.7930.9296.55261forward
CNT30369422Sorghum bicolorOryza glumipatula38.6918.0495.34236forward
CNT30576569Sorghum bicolorOryza barthii43.1121.7494.68263forward
CNT30582668Sorghum bicolorEchinochloa crusgalli41.4843.6298.81253forward
CNT30499448Sorghum bicolorDigitaria exilis37.8730.698.27231forward
CNT30116662Sorghum bicolorOryza nivara43.1111.6494.68263forward
CNT30594254Sorghum bicolorEragrostis curvula42.7931.4897.32261forward

Expression of CNT30368046

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSNVMVFPVRVFTKICILAAVGGSPPRCGGGDGGGWVGFGCGGVGGGV

Sequence

>CNT30368046
TGATAGAAGAATATGAAAACAAAATTTAACTCAGCATCACATCAACTCAGTAACAGGGGGTACCAATATGATAGATACTACTGCTCCATTTAAGTTTCAA
CCTCAGACAGATCTAAATGAGATTCAATTCGAGTAACCAACAGGTGGATGCTTGATAGGTAGGCGGGTAAAGCAAATCGGCGCAAGCGATTACGCCTTCT
GGTTGTAGACATAGGTGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCACCGCGGAG
GCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG
TCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCTTCCCCGTCAGGGTCT
TCACGAAGATCTGCATCTTGGCGGCGGTTGGGGGGTCGCCTCCGCGCTGCGGCGGCGGCGACGGCGGCGGCTGGGTAGGGTTTGGGTGCGGCGGGGTGGG
GGGTGGAGTC