Detailed information on CNT30368027


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 3e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30474080Sorghum bicolorSaccharum spontaneum46.0965.298.57489forward
CNT3011490Sorghum bicolorZea mays45.6254.0294.63484forward
CNT30369182Sorghum bicolorOryza glumipatula38.1748.2191.36405forward

Expression of CNT30368027

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVLLAIALLDALGLCRRVRLADRWLELLWRRRWYLKRGRETPPRPVLS*

>peptide 2 (49 aa)
AARDNEHSYSFLIEPWYSNLHHGTSRNQCARALTCIRTPPHLPGTKLVA*

>peptide 3 (59 aa)
MPLVRPGCWNTWRDGSLREMRQLWLRLGISVEKGDWAPAISVVVVDFPSDFSRYFCNSVL

>peptide 4 (66 aa)
MHPDTSSLAGHEVGGVGPGVVVDGVGEAEWVEAAAGVERVDDLAEWRGCSARGSGSGCPGSPARPR*

>peptide 5 (88 aa)
MVFKAREGNTAATSSILNVAKSCRKICCLDAIGASGMLEHLARREPQGDEAALAEARNLRGERRLGARDFCGGCGFSFRFLSIFLQLRA

>peptide 6 (34 aa)
MVQAETSARARSHASGHLLTCRARSWWRRPRRCC*

>peptide 7 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

Sequence

>CNT30368027
CGCGGCGCGAGATAATGAACACAGTTATTCCTTCTTGATTGAACCCTGGTACAGTAATTTACATCATGGTACAAGCCGAAACCAGTGCGCGCGCGCGCTC
ACATGCATCCGGACACCTCCTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGTGGGTCGAAGC
TGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGC
TGAAGATCTGCGAACCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAACACGCAGCCGAGCGCGCCGAGCAT
GGCCCAGCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCGGGGTCCGCCGACAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAAC
TCGCCAGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCCAGGTAGAGCACGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCGCCGGCTTGG
CCTTCGCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAAGAGGGACGACGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGAGCCAT
GGTGCTGCTCGCCATTGCGCTGCTTGATGCACTGGGTTTATGCAGAAGAGTGAGACTTGCAGATCGATGGCTTGAGTTGCTGTGGAGACGACGATGGTAT
TTAAAGCGAGGGAGGGAAACACCGCCGCGACCAGTTCTATCTTGAACGTCGCCAAGAGTTGCAGAAAAATCTGTTGCCTGGATGCCATTGGTGCGTCCGG
GATGCTGGAACACTTGGCGCGACGGGAGCCTCAGGGAGATGAGGCAGCTCTGGCTGAGGCTAGGAATCTCCGTGGAGAAAGGCGATTGGGCGCCCGCGAT
TTCTGTGGTGGTTGTGGATTTTCCTTCAGATTTCTCTCGATATTTTTGCAACTCCGTGCTC