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Detailed information on CNT30367941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30470896Sorghum bicolorSaccharum spontaneum23.8535.5588.67150forward

Expression of CNT30367941

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAQLQLQQLQPQLLPHLQPEPHPQLPLQQDMLSVEWITGEGRSR*

>peptide 2 (37 aa)
MGPSDRQTDRQTDRQTEKAQVMQKKNTYIRSGTRRWR*

>peptide 3 (36 aa)
AGVCRCLAPTLSDAALFSLSHIFFPSQNFVALQRGS*

Sequence

>CNT30367941
GCAGGAGTGTGCCGCTGTTTAGCACCAACTTTGAGTGATGCAGCCCTGTTTTCGCTTTCACACATATTTTTTCCATCTCAGAATTTTGTAGCACTGCAAA
GAGGTTCTTAGATTTTTTTGCAGCATCTCGTCAGAATCAGACACAGAAAGAAGCAAGCAGTGACGCTGACGCATGGGCCCGTCAGACAGACAGACAGACA
GACAGACAGACAGACAGACAGAGAAAGCACAGGTAATGCAGAAAAAAAACACATATATTAGATCAGGCACGAGACGTTGGAGATGAACAACCCCAGGATC
GGAGACGGAGACGAGGCCGGCGACCATGCATGAATAATGGCGGTGCACGCACGCAGTTGACAGGATCTTATTTAGACGCCGCTACATAGTTTAGTACGCT
GGGGGGTGGTTGTTGTCTCTGTCTCCTCCTTCCTCCTCGTGCGCCATCGCCGGGATGGCTCAGTTGCAGCTGCAGCAGCTGCAGCCGCAGCTGCTGCCGC
ACTTGCAGCCGGAGCCGCACCCGCAGTTGCCGCTGCAGCAAGACATGCTCTCGGTTGAATGGATCACAGGCGAAGGAAGAAGCAGGTGATGCTTTGTTAC
TGAAGGAGTTGTGCTGCCTTGCTTGCGAT