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Detailed information on CNT30367860


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382729Sorghum bicolorTriticum turgidum12.1923.1686.49148reverse complement
CNT30474047Sorghum bicolorSaccharum spontaneum15.3234.1995.7186forward
CNT30352118Sorghum bicolorEragrostis tef12.4423.388.08151reverse complement

Expression of CNT30367860

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPGHGLHCTALRPQEPEAPPARRHCNLLVGFRFRFRSSCMHAILLSFPGSGQWQSEEA*

>peptide 2 (64 aa)
MRNQCLAMACTALLCAPKNLKLPLHGGTATCWLDSDSDSEAPACMRSSLASQAVGSGRARRREQ*

>peptide 3 (32 aa)
MPLIHPDSPKIVRNHLTTREDHRRRILPNRIL*

>peptide 4 (48 aa)
MKTRAMMAATSSPRRLNPASSSASLLQHILPMPVDGCGLWDGMGWMAE*

>peptide 5 (90 aa)
MAVAYGMGWDGWLSRKKSKGGGGGGGGGACFLLLGTSWLLYFVMNLGFEGIVVAGQAVVGASLSRLPPISDGDAIPLFGCSTPPCPFILPA

Sequence

>CNT30367860
CTCTTCTAATGTATAATGACAATATCGGAACAATAAGCACAAAATAATTAAATTAGACAAATAGTGGGTTTTGTTAAAGTTCTGAGAAGACCCTATCATT
AAAAGAAGAAGAAGAAGATGTTATCTGCCAAAAAGTGGAGGATCTTTGAGTTAAACCATTGTGGTATTTTGATATTTTCGTAACCTTGTTTCTTTAGTGC
TTTCTTCGTGGATGCCACTAATCCATCCAGATTCACCGAAGATAGTGAGGAACCACCTAACAACCAGAGAAGATCACAGAAGAAGAATCTTGCCTAATCG
CATTCTATAACAGCATGAACTGAGACAAATCCGGTTCATTGCTTACTCTACTCTGATCAGATGAAAACATTCAGAATCAGAGAAGTAGTAGAAGGGAGGT
CGTAAGAGATATATAGTAGCAGGGAATGCAGCAAAAACACTTTTTTTTTTCAGGCTACCAAAAGCAACGAATTAAGGCTAGAGATGTAGGAACGTCCTGA
TTCGCTAAAACATATGGATTACATGATCTGCAGCAGCAGGATGGATATTACAGTTGAGTAGAAATTATTGCTGAACCGAAAGATGAGGAACCAATGCCTG
GCCATGGCCTGCACTGCACTGCTCTGCGCCCCCAAGAACCTGAAGCTCCCCCTGCACGGCGGCACTGCAACCTGTTGGTTGGATTCAGATTCAGATTCAG
AAGCTCCTGCATGCATGCGATCCTCCTTAGCTTCCCAGGCAGTGGGCAGTGGCAGAGCGAGGAGGCGTGAGCAGTGAGCAGTCAGCAGCAGGGGTAGACG
GCGACGCAGCGCCTCCTGGGCGGAGTGCAGAGGAGCATGAAGACGAGGGCGATGATGGCGGCGACGAGCAGCCCCAGGAGGTTGAACCCGGCCTCCTCCT
CCGCCTCGTTGCTGCAGCACATCTTGCCCATGCCGGTGGATGGCTGTGGCCTATGGGATGGGATGGGATGGATGGCTGAGTAGAAAAAAGAGCAAAGGGG
GGGGGGGGGGGGGGGGGGGGGGGGCTTGCTTCTTGCTTCTTGGTACTAGCTGGCTGCTATATTTTGTTATGAACCTTGGCTTTGAAGGCATTGTAGTTGC
AGGGCAGGCAGTGGTTGGGGCATCGCTATCGCGTCTCCCTCCTATCAGTGATGGTGATGCCATCCCCCTTTTTGGTTGTTCCACACCTCCATGTCCATTC
ATCCTCCCAGCCTC