Detailed information on CNT30367840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201936Sorghum bicolorPisum sativum68.8234.9590.61309forward
CNT30283592Sorghum bicolorTriticum aestivum71.0510.9497.18319forward
CNT30563336Sorghum bicolorActinidia chinensis25.6156.9390.43115reverse complement
CNT30236148Sorghum bicolorBrassica oleracea68.8220.1292.23309forward
CNT30555990Sorghum bicolorOryza glaberrima40.7611.6696.72183forward
CNT30257701Sorghum bicolorAvena sativa71.0545.9796.87319forward
CNT30628236Sorghum bicolorDaucus carota49.4420.4290.99222forward
CNT30426340Sorghum bicolorPapaver somniferum23.8313.4692.52107forward
CNT30148338Sorghum bicolorBrachypodium distachyon22.7224.8898.04102forward
CNT30116778Sorghum bicolorOryza nivara42.9829.3396.89193forward

Expression of CNT30367840

Peptides detected in this lncRNA

>peptide 1 (34 aa)
KLISLPFPAHQAKPVVSWSRPAKTKVPLKSVSTW*

Sequence

>CNT30367840
GAAATTGATAAGTCTGCCATTCCCAGCCCACCAAGCAAAGCCGGTGGTTTCTTGGTCACGACCAGCTAAAACGAAAGTTCCATTAAAGAGCGTTTCCACG
TGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCCTGAGCTACCATCCACGCACGAATACCCTCATTTAAAAGAATATTTTTGGTATAG
AAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGACACGTAGGTTCAGAGCCAGACCAACTACGCCAATAGCACTCA
TCCATAAACCGGTGACGGGTCGAGTAAGTCCCATCCGTCGTTAGTTGTCCGGGGAGTCCAAGAGGTGTACGTTCTAAAGACGATCACAGAGACAGTCGAA
CTCCAGCAGGACCTGCATCGTCAATGGTGCAGCAAAGTGGCGAACCCAG