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Detailed information on CNT30367799


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673389Sorghum bicolorSetaria viridis20.5831.3191.04134forward
CNT30532753Sorghum bicolorEucalyptus grandis10.627.8286.9669forward
CNT30591852Sorghum bicolorMusa acuminata14.1322.0690.2292forward
CNT30240454Sorghum bicolorAvena sativa12.923.8691.6784forward
CNT30655703Sorghum bicolorTriticum dicoccoides12.4422.5690.1281forward
CNT3011150Sorghum bicolorZea mays36.4128.0185.65237forward
CNT30679604Sorghum bicolorTriticum urartu12.4424.1190.1281forward
CNT30704201Sorghum bicolorPrunus avium12.7532.0584.3483forward
CNT30582309Sorghum bicolorEchinochloa crusgalli23.534.2392.16153forward
CNT30496573Sorghum bicolorDigitaria exilis37.9445.487.85247forward
CNT30604128Sorghum bicolorOryza punctata23.3552.4186.18152forward

Expression of CNT30367799

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQRKWRPELVDELRSCRAGPAAAAAAVPS*

>peptide 2 (47 aa)
MELPERPFTATGCTETAAAREAMARALAVVLLTGVPVRTTCTNLIRWN

>peptide 3 (42 aa)
MNSVTGRDDDPWRVESATDRELAVQSKLLLDHATQMEAGAGR*

>peptide 4 (57 aa)
QRHATPFFYFSVVYSRRNCVVFYNDTRLKGSFNCVPKEYTISASQIYQSYEQRNRQG*

Sequence

>CNT30367799
TACAAAGGCATGCAACACCATTTTTTTATTTTTCAGTAGTATATAGTAGAAGGAATTGTGTGGTCTTTTATAATGACACACGGCTAAAAGGCTCTTTTAA
TTGTGTGCCAAAAGAGTACACAATATCAGCATCACAAATATACCAAAGTTATGAACAGCGTAACAGGCAGGGATGATGATCCATGGCGAGTTGAGAGTGC
GACCGACCGGGAGCTAGCAGTACAAAGCAAGCTACTACTAGACCATGCAACGCAAATGGAGGCCGGAGCTGGTCGATGAGCTTAGATCTTGCCGCGCGGG
CCCGGCTGCGGCGGCTGCTGCGGTCCCTTCTTGATCGGCAGGAGCCGTAGAGGTCCCACTGCCCGGTGGTGTTGCCGATGTCCTCGAGGTCGAAGTAGAC
GCTCTTGTCGCCGTACTTGGCCACGACGGCGGCCCTGCGGGTGGAGCGGCAGGCGGCGCGGGCCGACGACGACGGCCTGCTGGCGACGGCGAGCTTCCTG
CCGGAGATGGAGCTGCCGGAGAGGCCCTTCACGGCCACGGGCTGCACGGAGACGGCGGCGGCGAGGGAGGCCATGGCGCGCGCACTGGCTGTTGTGTTGC
TCACTGGTGTCCCAGTGCGTACTACGTGCACAAACTTAATTCGGTGGAATC