Detailed information on CNT30367723


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672611Sorghum bicolorSetaria viridis31.9832.2686.19181forward
CNT30553850Sorghum bicolorOryza glaberrima31.4519.2686.52178forward
CNT30435628Sorghum bicolorAegilops tauschii29.5142.2884.43167forward
CNT30101761Sorghum bicolorOryza rufipogon31.833.7786.11180forward
CNT30116388Sorghum bicolorOryza nivara28.454685.71161forward

Expression of CNT30367723

Peptides detected in this lncRNA

>peptide 1 (76 aa)
NHLPFAFIHWETNWKAMEWNRGPAFICNKIWCVRRRDHSDHAQHRVQYRSLSLIRLRLSAQATTEQKASYQIRTSP*

>peptide 2 (59 aa)
MHSLLRPLNVTASSVASGFGMCAILSATNSFALSIRLCFSCFPSPAAACSLAMAAPLLG*

>peptide 3 (35 aa)
KPSSFCIHSLGNKLESNGMEQRTCVYLQQDMVRSS*

>peptide 4 (80 aa)
QTIFLLHSFIGKQTGKQWNGTEDLRLFATRYGAFVVGIIQITHNTEYSTDRCHSSVSGSQLRRRQNRKQAIRSEQVLESG*

Sequence

>CNT30367723
CAAACCATCTTCCTTTTGCATTCATTCATTGGGAAACAAACTGGAAAGCAATGGAATGGAACAGAGGACCTGCGTTTATTTGCAACAAGATATGGTGCGT
TCGTCGTAGGGATCATTCAGATCACGCACAACACAGAGTACAGTACAGATCGCTGTCACTCATCCGTCTCAGGCTCTCAGCTCAGGCGACGACAGAACAG
AAAGCAAGCTATCAGATCAGAACAAGTCCTTGAGAGTGGGTAGCTTGAACTCGCCGGAGCGTGTAGGTCACCTCGCAGATGGGGAGGCGGTGGTCGTAGG
GGTTGGACACGTTCACGCTGCTGTGCAGCGTGATGCACTCCCTGCTCAGACCTTTGAACGTCACCGCGTCCAGCGTCGCCTCCGGCTTCGGGATGTGCGC
GATCTTGTCGGCGACGAACTCCTTCGCCTTGTCCATCAGACTCTGCTTCTCGTGCTTCCCCTCACCCGCCGCCGCGTGCTCGCTCGCCATGGCTGCGCCT
CTTCTTGGATGATGATGCTGCTGCTGCTGCTGCTGATTGATGGATGGATGGATCTTGGGAGGGATG