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Detailed information on CNT30367653


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATL6|TIP41_MAIZE, E-value = 5e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370236Sorghum bicolorOryza glumipatula22.9810.8783.93168forward

Expression of CNT30367653

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MWPRTMSPTVTAGLRKVRTSSASTARTQPTSGVSCSSNESTSLFTSFAMDEWNVSRRSLVVAPVLGREGKAGAGGV

>peptide 2 (37 aa)
MLVDNELFYRNKHEPTMLTALPTATGQADGSSDVSIE*

>peptide 3 (42 aa)
RSFYSVHPIPSSRQNYNSTTVYLKKLQVPLPRIPFSSFLLHG*

>peptide 4 (33 aa)
MVRQMSPLSSGAGCRRGRTPAPARRRRAPPGAW*

Sequence

>CNT30367653
AGAGAAGTTTTTACTCTGTACATCCAATTCCATCTTCAAGACAAAATTACAATAGTACTACAGTGTACCTGAAAAAACTTCAGGTCCCACTCCCACGTAT
ACCATTCTCTAGTTTTCTACTACATGGCTAACTACTAATAGCCTTAACAAATCCTTGACAGAACCCCGCCCTCTAAAAAAAAAAGAATTCCTTGGCATGA
AAAGGGGGAAAAAAATACAAAGCCCATCAACAATTTCTACATCCAACAATCCTATACCAGGGTAACTATTTTACAGCAACCCTCTCTAATTACCTTGACC
AATATATGTATCCATCATGCTTGTAGACAATGAACTATTTTACAGAAACAAGCATGAACCAACCATGCTGACTGCCCTGCCCACAGCCACAGGGCAGGCC
GATGGTTCGTCAGATGTCTCCATTGAGTAGCGGAGCAGGATGCAGGCGAGGGAGGACGCCAGCACCTGCGCGGCGACGTAGAGCACCGCCCGGAGCTTGG
TGATGTGGCCGCGCACCATGAGCCCCACCGTCACGGCGGGGTTGAGGAAGGTGAGGACGAGCTCGGCCAGCACGGCGCGCACGCAGCCGACGTCCGGGGT
GTCTTGCTCCTCGAACGAATCGACCAGCTTGTTCACGAGCTTCGCCATGGATGAATGGAATGTCTCGAGGAGGAGCCTTGTTGTTGCTCCTGTTCTTGGC
CGGGAGGGGAAAGCGGGTGCGGGTGGGGTAA