Detailed information on CNT30367620


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693623Sorghum bicolorOryza sativa28.0514.490.74108forward
CNT30672463Sorghum bicolorSetaria viridis28.3122.4796.33109forward
CNT30521234Sorghum bicolorSetaria italica51.6927.5284.92199forward
CNT30435028Sorghum bicolorAegilops tauschii18.1822.5187.1470forward
CNT30655869Sorghum bicolorTriticum dicoccoides18.1822.4485.7170forward
CNT30338878Sorghum bicolorEragrostis tef25.4512.5693.8898forward

Expression of CNT30367620

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MSLDLAARARLRRLLRSLLDRQEVEVDALVAVLGHDGGPAGGAAGGAGRRRRPAGDGELPAGDGAAGEALHGHGLHGDGGGEGGHGARTG

>peptide 2 (38 aa)
TGRDDDPWRVESATDRELAVQSKLLLDHATQMEAGAGR*

>peptide 3 (29 aa)
MQRKWRPELVDELRSCRAGPAAAAAAVPS*

Sequence

>CNT30367620
ACAGGCAGGGATGATGATCCATGGCGAGTTGAGAGTGCGACCGACCGGGAGCTAGCAGTACAAAGCAAGCTACTACTAGACCATGCAACGCAAATGGAGG
CCGGAGCTGGTCGATGAGCTTAGATCTTGCCGCGCGGGCCCGGCTGCGGCGGCTGCTGCGGTCCCTTCTTGATCGGCAGGAGGTCGAAGTAGACGCTCTT
GTCGCCGTACTTGGCCACGACGGCGGCCCTGCGGGTGGAGCGGCAGGCGGCGCGGGCCGACGACGACGGCCTGCTGGCGACGGCGAGCTTCCTGCCGGAG
ATGGAGCTGCCGGAGAGGCCCTTCACGGCCACGGGCTGCACGGAGACGGCGGCGGCGAGGGAGGCCATGGCGCGCGCACTGGCTG