Detailed information on CNT30367618


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673517Sorghum bicolorSetaria viridis18.8755.1490.3134forward
CNT30555389Sorghum bicolorOryza glaberrima53.6654.7481.1381forward
CNT30138306Sorghum bicolorLolium perenne46.0652.5784.4327forward
CNT3012274Sorghum bicolorZea mays93.6691.3593.08665forward
CNT30353380Sorghum bicolorEragrostis tef61.5575.8786.27437forward
CNT30597090Sorghum bicolorOryza meridionalis24.7938.5182.39176forward
CNT30116475Sorghum bicolorOryza nivara31.6940.3982.22225forward
CNT30551969Sorghum bicolorOryza brachyantha35.2128.1282.4250forward

Expression of CNT30367618

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ERLICSQSLQSCYSWHQKHWMTLILKMSLFLLHAS*

>peptide 2 (34 aa)
MLASFIWLTTRVLFWLSLDCSLDSALAAGDLSLI*

>peptide 3 (37 aa)
KVDLFSISPIMLLLASETLDDIDPKDVSLFASRFMRL*

>peptide 4 (31 aa)
MRTQHFHRPRHHWDPSFHMLLWLYHLQHFLA*

Sequence

>CNT30367618
GAAAGGTTGATCTGTTCTCAATCTCTCCAATCATGTTACTCCTGGCATCAGAAACATTGGATGACATTGATCCTAAAGATGTCTCTCTTTTTGCTTCACG
CTTCATGAGACTTTGATAGAACTCCACAATCTCCGGTGCACGGTGTACCTTGTCACCCCCACCAAGGTTCCTTGGTAGAGCACCTGGAGGTGCACCTGGT
GCACGTGGCGTTTGTGCTCCACTTGCAGTATTAGTAGCCCCTGAAGCAGTGGTTGATCGAGGGGGAGGTGGTCTGGGAACTCTTGTTGCTCTCTTCTCAA
TGTTGGCAAGCTTCATCTGGCTCACCACCAGGGTGTTGTTTTGGTTGTCACTGGATTGCTCACTGGATTCAGCATTAGCTGCAGGGGATCTCTCCTTAAT
TTGAGCAAGTTTCGGAGGGAGTGCACCTTTAGGAGAGGAAATAAGAGCTGAACTGTGTCCACCACCAAACCTTTGTGCTCTTGCTTGCCCAGCCTTCTCT
TTTATCACCTTCTCCCGTTCAGTTGCAAGTTTGTGCCTATCTTTGTAAGCGGGATACTTCTCATCAGCAAAACCTTCGACTGTCTTGGACATCAGTTGGA
ATGAGGACGCAACATTTTCATCGTCCAAGACATCATTGGGATCCCTCTTTCCATATGTTGTTATGGCTGTACCATCTCCAGCATTTTTTAGCATGAGAGC
TTCGAGGGGG