Detailed information on CNT30367564


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XJ39|NLT2A_ORYSJ, E-value = 5e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676294Sorghum bicolorSetaria viridis14.4332.393.9883forward
CNT30524109Sorghum bicolorSetaria italica43.6556.0387.25251forward
CNT3068317Sorghum bicolorLeersia perrieri27.331.485.99157forward
CNT30371391Sorghum bicolorOryza glumipatula15.4821.5596.6389forward
CNT30151138Sorghum bicolorBrachypodium distachyon10.6120.6195.0861forward
CNT30104730Sorghum bicolorOryza rufipogon15.325.6696.5988forward
CNT30578036Sorghum bicolorOryza barthii15.329.5396.5988forward
CNT30582166Sorghum bicolorEchinochloa crusgalli26.7824.5688.96154forward
CNT30117882Sorghum bicolorOryza nivara15.320.2396.5988forward

Expression of CNT30367564

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLTPHLEGMLAALPALRQLQAVRLSAVLLAAELRLLTPLQQAAEGAVPVPRA*

Sequence

>CNT30367564
CGTGCGTACTTGTTGATCGAGTCAGTACATGCATGCAAAAGTAGTAAAATATACTGTTACGTACTATACTGAATAAAAAAGCCAATTCATTCAGATGATC
GATGACTTGGCTTAGATCTTACGGTAGGGTCGGTCGTACTCGTACGTACCTGGAGCAGTCGATGGAGGCGCTGATGGTGTAGGGGATGTTGACGCCGCAC
TTGGAGGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCAGTTGCAGGCGGTGCGCTTGTCGGCGGTGCTGCTGGCGGCGGAGTTGAGGCTCCTGACGCCGC
TGCAGCAGGCCGCGGAGGGTGCGGTGCCGGTGCCGCGGGCGTAGGCGAGGCAGGGGCTAATCGCGGAGTTCACCTGCCCGCAGGTGACGGCGGCCTCCGA
CGTCGTCGTCGCCGCTGCCAGCAGCACCGCGGCCACGACGACGGCGATCATCGCCACAGCAAACTGCATGCTGCGTGCCATGTCGATCGATCGAGCTATT
CGTGTGTGCTGAGTGATCTGAGTGCCTGACTGTGTGCTAGTATGCTAGCTTTGGAATGCAGTGAGAGCAAGTGCT