CANTATAdb - search

Detailed information on CNT30367469

BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY5|METE1_ORYSJ, E-value = 2e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30673222	Sorghum bicolor	Setaria viridis	43.76	48.34	95.08	305	forward
CNT30513228	Sorghum bicolor	Juglans regia	47.92	42.93	85.33	334	forward
CNT30375849	Sorghum bicolor	Arabidopsis thaliana	39.02	24.29	84.56	272	forward
CNT30504596	Sorghum bicolor	Nicotiana attenuata	33.57	38.05	82.91	234	forward
CNT30300058	Sorghum bicolor	Triticum aestivum	9.18	20.71	85.94	64	forward
CNT30136078	Sorghum bicolor	Lolium perenne	30.27	81.47	89.57	211	forward
CNT30282	Sorghum bicolor	Zea mays	20.37	46.71	92.25	142	forward
CNT30650401	Sorghum bicolor	Rosa chinensis	42.47	33.6	84.46	296	forward
CNT30211728	Sorghum bicolor	Helianthus annuus	29.99	79.17	83.25	209	forward
CNT30721247	Sorghum bicolor	Triticum spelta	42.75	56.76	90.6	298	forward
CNT3027382	Sorghum bicolor	Populus trichocarpa	45.34	65.29	83.54	316	forward
CNT30118099	Sorghum bicolor	Oryza nivara	41.32	35.34	92.71	288	forward

Expression of CNT30367469

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MPAPYFTPSRKTERSFSSDREFSMVITSASMSMMEWMMSLKLE*

>peptide 2 (59 aa)
MSLAAETMLVRAGLTSAYLRVLRPQSGFTQRMLVSSTASILLTRSAISSVDGILGEWMS*

>peptide 3 (35 aa)
GIAWGDHRAKKNTNLKTDGAEREQGTLIIGNKWLR*

Sequence

>CNT30367469
GGTATTGCCTGGGGCGATCATCGAGCCAAGAAAAATACTAATCTAAAAACAGATGGAGCAGAACGGGAACAGGGGACCCTGATTATTGGAAACAAATGGC
TTCGATGACACCCTCCTTGTAATTAAAGGAATAGGCCATGGCGGAGACGACAGTCCTCACTTGGCACTGGCGAGCTGGGTGCGGATGAGCTTGGCAGCAG
AGACCATGTTGGTTAGGGCGGGCTTGACCTCCGCGTACTTACGGGTCTTGAGACCACAGTCAGGGTTCACCCAGAGGATGTTGGTGTCGAGCACCGCAAG
CATCTTGTTGACGCGGTCGGCAATCTCCTCGGTGGACGGGATCCTGGGGGAGTGGATGTCGTAGACACCAGGGCCAATGCCAGCACCGTACTTCACACCC
TCACGGAAGACGGAGAGGAGCTTCTCGTCAGACCGGGAGTTCTCGATGGTGATCACATCGGCGTCCATGTCAATGATGGAGTGGATGATGTCGTTGAAGT
TGGAGTAGCACATGTGGGTGACTTACTAGTTGGTGTCAAACCACTTGGTCATCTCCATAGCAGGGACAGTGGCATTGCCCCTAGCCATGGAGAAGTAGGT
ATCGAACCCGATCTCTCCTCCAGTCCATGAGTAACACTCAAGGGCAAACTTGAGCTCCCTCTTGGGGCCCATGCGAGGGTATCCAACAATGTGGGAC