Detailed information on CNT30367441


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FLP9|GGAP2_ARATH, E-value = 1e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676252Sorghum bicolorSetaria viridis30.5438.4192.83237forward
CNT30523823Sorghum bicolorSetaria italica28.8725.6695.54224forward
CNT30183480Sorghum bicolorSecale cereale20.2353.9584.08157forward
CNT3011155Sorghum bicolorZea mays16.6222.4393.8129forward
CNT30685530Sorghum bicolorTriticum urartu33.2543.6584.11258forward
CNT3032755Sorghum bicolorTheobroma cacao17.0131.9681.06132forward
CNT30582280Sorghum bicolorEchinochloa crusgalli26.4218.9195.61205forward
CNT30557237Sorghum bicolorPanicum hallii30.6719.0992.44238forward

Expression of CNT30367441

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPPHSRSSASARCGHLSPTRLGSPECPAAPGSLHPEPASLHNTALLKR*

>peptide 2 (63 aa)
SPREQQDTNESKVAAEHKGSQAYTVPTDLYYGTAIGDREHTTASPRTHWWTRQPSATEPGQQR*

>peptide 3 (93 aa)
TTRAAGHKREQSSSRAQGLASIYRANGPLLRHSYRRPGTHNSQSTDSLVDEAAFSDRTRPAALKMYAFTSSKRSSERETSARSFHAEVSDASS*

Sequence

>CNT30367441
TCACCACGAGAGCAGCAGGACACAAACGAGAGCAAAGTAGCAGCAGAGCACAAGGGCTCGCAAGCATATACCGTGCCAACGGACCTTTATTACGGCACAG
CTATAGGAGACCGGGAACACACAACAGCCAGTCCACGGACTCACTGGTGGACGAGGCAGCCTTCAGCGACAGAACCAGGCCAGCAGCGCTGAAGATGTAC
GCCTTCACTTCCTCGAAGCGCTCCTCAGAGAGGGAGACCTCAGCGAGGAGCTTCCACGCAGAGGTTTCAGATGCCTCCTCATAGTCGCTCCTCCGCTTCA
GCACGATGTGGCCACTTATCTCCCACACGGCTGGGTTCACCTGAGTGTCCAGCAGCTCCTGGCTCACTTCACCCAGAGCCTGCTTCTCTGCATAACACTG
CATTATTGAAGAGATAAAAGTTTGTTAGAACATCACAAAGAGAGTTCCACCAATTCAGTCCAGATTCTACAAAACCCAGAAATTGTGTAATGATTTTACC
TGGGGGAACAGGAAGACCCTCTTTCCACAGTCAGAAATGAGCACGTTGTAAGGCACATTGTTGTCCTGCAGCCAAATGCAAGCATTGGAAACCACATTTG
CCAGGTCCTCCAGTGTGTTCCCTCCCTCAAATACCAGGCCTCTCACAGGATAATTTATCAGCTTGGACACGGTCACTCCATTCTTCATTGTGTCCTCAGA
AAGAGGGATCTTGAGGGTAGCTGCCTTCTCGACAGGGAAAGGCACTGACAAGTAGTATGCCTGAAAGTGGGGTTTA