Detailed information on CNT30367427


BLAST search results

BLAST vs Swiss-Prot:
sp|O65107|PSAN_MAIZE, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676742Sorghum bicolorSetaria viridis32.5817.8794.57129forward
CNT305897Sorghum bicolorZea mays33.3328.3996.97132forward
CNT30349482Sorghum bicolorEragrostis tef15.6626.1693.5562forward
CNT30582696Sorghum bicolorEchinochloa crusgalli33.3325.2994.7132forward
CNT30551854Sorghum bicolorOryza brachyantha31.5717.7387.2125forward

Expression of CNT30367427

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MYTTRSPPHFASPHFQKTLEPHLNFSFPSHSISRSWHPVKL*

Sequence

>CNT30367427
AAAATACTATAATTCACTCTCCCCAATTAATGCAAGAGGTTCATGATGATCAATCAGATGATGAGATGACACAAATACACTGACCACAATTACACATCCA
AATTCTTCCTGCAGTTTGGGCGCACATCTAGGTACACACACACGTACATGTACACCACCAGGTCGCCTCCTCATTTTGCTTCACCCCACTTCCAGAAAAC
GTTGGAGCCGCACTTGAACTTCTCCTTCCCCTCGCACTCGATCTCGAGGTCCTGGCACCCAGTGAAGTTGTAGGGGAACGTGCAGCTGCCGAACTCGACG
GTGTAGGCGCGCGCAAACGCGGCGCGGCGGCCCTCGGGCGCGACCAGCTGCACCCGCTTCGCCTGCGACGAGGCGGCGGCGGCGGCGGCCTGGGGC