Detailed information on CNT30367418


BLAST search results

BLAST vs Swiss-Prot:
sp|P20026|MYB1_HORVU, E-value = 2e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220903Sorghum bicolorHordeum vulgare10.3433.8295.6569forward
CNT30540820Sorghum bicolorBrassica napus22.9430.6684.31153forward
CNT30131453Sorghum bicolorLolium perenne21.7438.6788.97145forward
CNT30596691Sorghum bicolorOryza meridionalis21.5912.5790.97144forward
CNT30577574Sorghum bicolorOryza barthii21.5914.7790.97144forward

Expression of CNT30367418

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MRCHHHRWSPASSWTALIAGGPGPGGDGCLPRQRRWRHRAVCASWGRCRGR*

>peptide 2 (43 aa)
EEKENKLITMYHCRCISQCPANPGDSSTSISFSSQMRSLYHSL*

>peptide 3 (75 aa)
MAACRGSGGGDTERSVRLGVDAAGDEFVFLVGEVAALEVWAEVVDPPEAAALAAAQQAGRLGERPPAAFAVGLDVS

Sequence

>CNT30367418
GGAAGAAAAAGAAAATAAGCTAATAACTATGTATCACTGCAGGTGCATCTCTCAGTGCCCTGCAAACCCAGGCGATTCAAGCACAAGCATATCGTTTTCC
TCTCAAATGAGGAGCTTGTACCACTCTCTTTAGGCCTTGTTTGGATGTAGTCGGATTCACATCAATCCACATGTGTTGGGGTAGGTTGGAGTGGAACTTG
AACTAAATTTCACTCCAATTCACTCCAATACATGTGGATTGAGGTGAATCTGACAACATCGAAACAAGGCAAGGCTTTAGGTGGAGTTTTTTTTACTACC
GTTTGCATCCCCTAAGACCTCTCCGCTTGTTGCTTCTGCTTCTTGACGCGTCGGCGGCGATGCGCTGTCATCATCACCGCTGGTCTCCGGCGAGCAGCTG
GACCGCGCTGATAGCAGGTGGTCCTGGTCCTGGCGGCGATGGCTGCTTGCCGCGGCAGCGGAGGTGGAGACACCGAGCGGTCTGTGCGTCTTGGGGTCGA
TGCCGCGGGCGATGAGTTCGTCTTCCTCGTGGGTGAAGTTGCCGCGCTTGAGGTCTGGGCGGAGGTAGTTGATCCACCGGAGGCGGCAGCTCTTGCCGCA
GCGCAGCAGGCCGGCCGCCTTGGGGAGCGACCTCCAGCAGCCTTCGCCGTGGGCCTTGATGTAAGCG