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Detailed information on CNT30367313


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 2e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Sorghum bicolorSetaria viridis36.0948.8197.56205forward
CNT30546122Sorghum bicolorIpomoea triloba15.492592.0588forward
CNT30512691Sorghum bicolorJuglans regia30.8110.7882.86175forward
CNT30616186Sorghum bicolorSesamum indicum10.3925.5491.5359forward
CNT30393881Sorghum bicolorTriticum turgidum18.6626.392.45106forward
CNT30587002Sorghum bicolorMusa acuminata13.9129.2694.9479forward
CNT3086243Sorghum bicolorVigna radiata25.8832.8985.03147forward
CNT30511330Sorghum bicolorSolanum lycopersicum18.8426.2389.72107forward
CNT30555589Sorghum bicolorOryza glaberrima38.5612.5595.43219forward
CNT30441013Sorghum bicolorAegilops tauschii22.8936.2193.85130forward
CNT30652852Sorghum bicolorRosa chinensis18.3126.1391.35104forward
CNT30624277Sorghum bicolorDaucus carota31.5137.6184.36179forward
CNT30721746Sorghum bicolorTriticum spelta38.5613.6294.52219forward
CNT30338628Sorghum bicolorEragrostis tef40.1464.2397.37228forward
CNT30371441Sorghum bicolorOryza glumipatula16.5523.0493.6294forward
CNT30646608Sorghum bicolorCannabis sativa26.4132.1983.33150forward
CNT3054135Sorghum bicolorAmborella trichopoda31.5129.4985.47179forward
CNT3024196Sorghum bicolorPopulus trichocarpa16.220.2689.1392forward
CNT30322486Sorghum bicolorAsparagus officinalis31.3437.9589.33178forward
CNT30151099Sorghum bicolorBrachypodium distachyon36.4453.9195.17207forward
CNT30104724Sorghum bicolorOryza rufipogon40.6722.1393.94231forward
CNT30578506Sorghum bicolorOryza barthii40.6714.5393.94231forward
CNT30117466Sorghum bicolorOryza nivara43.4922.1189.47247forward
CNT30725998Sorghum bicolorLupinus angustifolius28.5277.1485.19162forward

Expression of CNT30367313

Peptides detected in this lncRNA

>peptide 1 (80 aa)
ADGGGVTNVLVVTSSVGMLHRVHGHTTHLRPAVPLHTVLVVRVTSLQHRLLSPASTSDLPNHGTAAAGDNLLGLWLITMA*

>peptide 2 (57 aa)
MPSAATKSSFWCLYLKGWRKVTLASGAPRPGSWMTSVTTPLRYPLRSPKSRERNRAGP

>peptide 3 (29 aa)
GGRWRRDQCAGGYLLRGDAPQGSWPHHAP*

>peptide 4 (68 aa)
MCWWLPPPWGCSTGFMATPRTLGQQFLFTRYLWYALPAFSIGFSVLPPPATCPIMARQLLGTIFLGCG*

Sequence

>CNT30367313
GGCGGACGGTGGAGGCGTGACCAATGTGCTGGTGGTTACCTCCTCCGTGGGGATGCTCCACAGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTT
CCTCTTCACACGGTACTTGTGGTACGCGTTACCAGCCTTCAGCATCGGCTTCTCAGTCCTGCCTCCACCAGCGACCTGCCCAATCATGGCACGGCAGCTG
CTGGGGACAATCTTCTTGGGTTGTGGCTGATCACGATGGCGTAGTCCCCAGAGGCCCTGGCGAAGACACCACGGTCACCGACGTGGTGCTCGACGTTGCA
GACGACGGCACCCTCGGGGATCCCGCGGAGCGGCAGGACGTTGCCGATGGAGAGCGTGGCGCGGCGGCCGCAGTAGACGAACTGGCCCGTGTACATGCCC
TCGGCGGCGACGAAGAGCTCCTTCTGGTGCTTGTACCTGAAGGGGTGGCGGAAGGTGACCTTGGCGAGCGGCGCGCCGCGGCCCGGGTCGTGGATGACGT
CGGTGACGACGCCCTTGAGGTACCCGTTGCGCTCGCCGAAGTCGAGGGAGCGGAACCGGGCGGGGCCC