Detailed information on CNT30367300


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672513Sorghum bicolorSetaria viridis25.0628.2586.73113forward
CNT30555770Sorghum bicolorOryza glaberrima24.3929.1885.45110forward
CNT30597166Sorghum bicolorOryza meridionalis24.3939.0185.45110forward
CNT30105511Sorghum bicolorOryza longistaminata24.8344.885.71112forward
CNT30104583Sorghum bicolorOryza rufipogon24.3951.8985.45110forward
CNT30578457Sorghum bicolorOryza barthii24.8319.7584.82112forward
CNT30118059Sorghum bicolorOryza nivara18.8529.0187.0685forward
CNT30604899Sorghum bicolorOryza punctata24.8348.0785.71112forward

Expression of CNT30367300

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAETTVLTWHWRAGYFPAGKPALVTSPRVWVPRTRSKP*

Sequence

>CNT30367300
TGAGCGCAAACACAATTAGATATTAACTTCCCGATACGAGATCTTTACCTTGAGTAAGACACACCTCGGAGTGGCAGATGAAACACTGCAAAGATACCAC
TCAGTTTTACAATACAAGTACACGGGCAACTTGCCTCTGAACCACCAAATGGAGTAAAACAGGTATTGCCTGGGGCGATCATCGAGCCAAGAAAAATACT
AATCTAAAAACAGATGGAGCAGAACGGGAACAGGGGACCCTGATTATTGGAAACAAATGGCTTCGATGACACCCTCCTTGTAATTAAAGGAATAGGCCAT
GGCGGAGACGACAGTCCTCACTTGGCACTGGCGAGCTGGGTACTTTCCAGCAGGGAAACCAGCACTCGTGACAAGTCCAAGAGTTTGGGTTCCACGGACA
AGATCAAAACCATAAGCAGTCACACCGCTCAGAGATGTTAGGGTCCTGCAT