Detailed information on CNT30367289


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY5|METE1_ORYSJ, E-value = 7e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521178Sorghum bicolorSetaria italica18.4221.4795.24105forward
CNT30403349Sorghum bicolorBeta vulgaris35.0957.4789200forward
CNT30249492Sorghum bicolorAvena sativa26.6744.5792.11152forward
CNT309700Sorghum bicolorZea mays14.7425.9394.0584forward
CNT3022975Sorghum bicolorPopulus trichocarpa31.7526.9386.74181forward
CNT30148668Sorghum bicolorBrachypodium distachyon37.5470.1690.65214forward

Expression of CNT30367289

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MPAPYFTPSRKTERSFSSDREFSMVITSASMSMMEWMMSLKLE*

Sequence

>CNT30367289
TGGGAGTGTACAATTAACCTGAGCGCAAACACAATTAGATATTAACTTCCCGATACGAGATCTTTACCTTGAGTAAGACACACCTCGGAGTGGCAGATGA
AACACTGCAAAGATACCACTCAGTTTTACAATACAAGTACACGGGCAACTTGCCTCTGAACCACCAAATGGAGTAAAACAGGTATTGCCTGGGGCGATCA
TCGAGCCAAGAAAAATACTAATCTAAAAACAGATGGAGCAGAACGGGAACAGGGGACCCTGATTATTGGAAACAAATGGCTTCGATGACACCCTCCTTGT
AATTAAAGGAATAGGGTTCACCCAGAGGATGTTGGTGTCGAGCACCGCAAGCATCTTGTTGACGCGGTCGGCAATCTCCTCGGTGGACGGGATCCTGGGG
GAGTGGATGTCGTAGACACCAGGGCCAATGCCAGCACCGTACTTCACACCCTCACGGAAGACGGAGAGGAGCTTCTCGTCAGACCGGGAGTTCTCGATGG
TGATCACATCGGCGTCCATGTCAATGATGGAGTGGATGATGTCGTTGAAGTTGGAGTAGCACATGTGGGT