Detailed information on CNT30367194


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84N29|NLTP3_WHEAT, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697712Sorghum bicolorOryza sativa30.811.3787.6773forward
CNT30677319Sorghum bicolorSetaria viridis48.5242.1287.83115forward
CNT30524578Sorghum bicolorSetaria italica29.1116.5595.6569forward
CNT30342139Sorghum bicolorEragrostis tef28.6920.2491.1868forward
CNT30597178Sorghum bicolorOryza meridionalis30.3821.9587.572forward
CNT30371396Sorghum bicolorOryza glumipatula30.810.6687.6773forward
CNT30104684Sorghum bicolorOryza rufipogon30.823.9387.6773forward
CNT30578372Sorghum bicolorOryza barthii30.385.2790.2872forward
CNT30118058Sorghum bicolorOryza nivara30.813.6787.6773forward
CNT30593112Sorghum bicolorEragrostis curvula27.8522.2292.4266forward

Expression of CNT30367194

Peptides detected in this lncRNA

>peptide 1 (58 aa)
LVAVGGHADGERHRHAACRSELLRACPFRLRTPLQHDDGSALALPVAYGMHGASAVPT*

>peptide 2 (61 aa)
LLQSVDMLMGKGTGTPPAGPSCCAPARSGSARRCSTTTAARSPSPSRTGCTAPAPSPPDRR*

Sequence

>CNT30367194
ACTTGTTGCAGTCGGTGGACATGCTGATGGGGAAAGGCACCGGCACGCCGCCTGCCGGTCCGAGCTGCTGCGCGCCTGCCCGTTCAGGCTCCGCACGCCG
CTGCAGCACGACGACGGCAGCGCGCTCGCCCTCCCCGTCGCGTACGGGATGCACGGCGCCAGCGCCGTCCCCACCTGACCGCAGGTGATCGCCGCCGACG
CAGACGACGCCGACGCCAGCAGCAGCGCCACCACCAC