Detailed information on CNT30367192


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676504Sorghum bicolorSetaria viridis31.642.7190.59170forward
CNT30557055Sorghum bicolorPanicum hallii43.4931.3390.6234forward

Expression of CNT30367192

Peptides detected in this lncRNA

>peptide 1 (29 aa)
ILFSLRSRRATHTLSQTFAVASLIFAVND*

>peptide 2 (54 aa)
MIPGTDGGIRRCRSFSVYSATCSGVALSLASAPGVTMDGFSRMPSNITLFSAIA*

>peptide 3 (54 aa)
MPSLASAASPSEEHDPRHGRRDPAVQELQRVLRHLLRRRPVLGLRPRRHHGWLQ*

>peptide 4 (54 aa)
MYLCNRTRTASISTMHGRPWIISWLSRGDGSEYVLNHDHQYTYLGEGRTSAVFR*

>peptide 5 (98 aa)
YIIFPQISPRHAYIIPDFCSSELDLCSKRLAVILLVCIYVTGHVRHRSAPCMVVHGSYHGFHGEMDRSTCLTMIISTRISERVVRRRYSGDGRGRPGD*

Sequence

>CNT30367192
ATATATTATTTTCCCTCAGATCTCGCCGCGCCACGCATACATTATCCCAGACTTTTGCAGTAGCGAGCTTGATCTTTGCAGTAAACGACTAGCAGTAATA
CTACTAGTATGTATTTATGTAACAGGACACGTACGGCATCGATCAGCACCATGCATGGTCGTCCATGGATCATATCATGGCTTTCACGGGGAGATGGATC
GGAGTACGTGCTTAACCATGATCATCAGTACACGTATCTCGGAGAGGGTCGTACGTCGGCGGTATTCCGGTGATGGCCGCGGCCGGCCGGGCGATTAGTA
GCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGAACATGATCCCCGGCACGGACGGCGGGATCCGGCGGTGCAGGAG
CTTCAGCGTGTACTCCGCCACCTGCTCCGGCGTCGCCCTGTCCTTGGCCTCCGCCCCCGGCGTCACCATGGATGGCTTCAGTAGGATGCCCTCGAACATC
ACGTTGTTCTCCGCCATCGCGTAGAACGTCTCCGCCCA