Detailed information on CNT30367085


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697760Sorghum bicolorOryza sativa15.2621.4893.158forward
CNT30453892Sorghum bicolorSaccharum spontaneum51.0541.9991.75194forward
CNT302331Sorghum bicolorZea mays29.2122.1192.79111forward
CNT30339139Sorghum bicolorEragrostis tef12.3720.3591.4947forward

Expression of CNT30367085

Peptides detected in this lncRNA

>peptide 1 (36 aa)
HGAQDEDEHSTNTTCDQKHRWATTTNTRTRRRRTTR*

>peptide 2 (38 aa)
TGLKTRTNTALTQLAIKNTDGQQQQTHGHDDDEQQDDR*

>peptide 3 (65 aa)
MVAVANKITWPRGPHRSVPPVPIGVAVATAAAAATTVAAADEAAVLNVRRRHLFRSPTNRNPRRT*

Sequence

>CNT30367085
GCACGGGGCTCAAGACGAGGACGAACACAGCACTAACACAACTTGCGATCAAAAACACAGATGGGCAACAACAACAAACACACGGACACGACGACGACGA
ACAACAAGATGATAGATAAACCCTATGGACTAGGGTAACAACACAACATGGTAGCAGTAGCGAACAAGATAACTTGGCCGCGCGGGCCCCACCGCTCAGT
TCCTCCAGTTCCCATCGGAGTTGCCGTAGCCACCGCCGCCGCGGCTGCCACCACCGTAGCCGCCGCCGACGAAGCAGCGGTACTCAACGTCCGACGCCGC
CATCTCTTCCGCTCACCCACGAACCGGAACCCCCGAAGAACCTGACGAACCCGAACCGAACCGAACCGGAGGGGGAGGAG